WormBase Tree Display for CDS: C01B12.1
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| C01B12.1 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C01B12 | |||
| Structure | Source_exons | 1 | 162 | |||
| 215 | 874 | |||||
| 927 | 1001 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | O17209 | ||
| UniProt | UniProtAcc | O17209 | ||||
| UniProt_GCRP | UniProtAcc | O17209 | ||||
| AlphaFold | entry | O17209 | ||||
| NCBI_protein | GI_number | GI:373218508 | ||||
| Protein_id | CHROMOSOME_II | CCD61131 | 1 | |||
| DB_remark | SQT-2 protein; contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00005017 | ||||
| Corresponding_transcript | C01B12.1.1 | |||||
| Corresponding_protein | CE07789 | |||||
| Corresponding_PCR_product | cenix:132-g2 | |||||
| mv_C01B12.1 | ||||||
| sjj_C01B12.1 | ||||||
| Corresponding_oligo_set | 190091_at | |||||
| A_12_P103511 | ||||||
| A_12_P135280 | ||||||
| A_12_P163113 | ||||||
| Aff_C01B12.1 | ||||||
| GPL13394_WBGene00005017 | ||||||
| GPL13914_C01B12.1 | ||||||
| GPL14144_C01B12.1_367-426_0.913_17_C | ||||||
| GPL14144_C01B12.1_527-586_0.950_1_A | ||||||
| GPL14144_C01B12.1_619-678_0.938_6_B | ||||||
| GPL19516_CGZ0001622 | ||||||
| GPL21109_C01B12.1 | ||||||
| GPL3518_CE07789 | ||||||
| GPL8304_CE_WBGene00005017_A | ||||||
| GPL8673_C01B12_1P00145 | ||||||
| GPL8673_C01B12_1P00168 | ||||||
| GPL8673_C01B12_1P00192 | ||||||
| GPL9450_C01B12.1 | ||||||
| cea2.p.28647 | ||||||
| Matching_cDNA (39) | ||||||
| RNAi_result (12) | ||||||
| Microarray_results (20) | ||||||
| Brief_identification | Nematode cuticle collagen N-terminal domain-containing protein | Accession_evidence | UniProt | TR:O17209 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
