WormBase Tree Display for CDS: Y55D5A.5d
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| Y55D5A.5d | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y55D5A | |||
| Structure | Source_exons (16) | |||||
| DB_info | Database | KEGG | KEGG_id | 2.7.10.1 | ||
| TrEMBL | UniProtAcc | A0A0K3AXA0 | ||||
| UniProt | UniProtAcc | A0A0K3AXA0 | ||||
| AlphaFold | entry | A0A0K3AXA0 | ||||
| NCBI_protein | GI_number | GI:919007384 | ||||
| Protein_id | CHROMOSOME_III | CTQ86617 | 1 | |||
| DB_remark | DAF-2 protein; contains similarity to Pfam domains PF00757 (Furin-like cysteine rich region), PF01030 (Receptor L domain), PF07714 (Protein tyrosine and serine/threonine kinase); contains similarity to Interpro domains IPR036941 (Receptor L-domain superfamily), IPR011009 (Protein kinase-like domain superfamily), IPR001245 (Serine-threonine/tyrosine-protein kinase, catalytic domain), IPR009030 (Growth factor receptor cysteine-rich domain superfamily), IPR003961 (Fibronectin type III), IPR013783 (Immunoglobulin-like fold), IPR000494 (Receptor L-domain), IPR006211 (Furin-like cysteine-rich domain), IPR036116 (Fibronectin type III superfamily), IPR020635 (Tyrosine-protein kinase, catalytic domain) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Curator_confirmed | WBPerson1983 | ||||
| Feature_evidence | WBsf161433 | |||||
| Visible | Gene | WBGene00000898 | ||||
| Corresponding_transcript | Y55D5A.5d.1 | |||||
| Corresponding_protein | CE50312 | |||||
| Corresponding_PCR_product | cenix:66-g11 | |||||
| mv_AAC47715 | ||||||
| sjj_Y55D5A_391.b | ||||||
| sjj_Y55D5A_392.a | ||||||
| sjj_Y55D5A_392.a_1 | ||||||
| Corresponding_oligo_set | 172033_x_at | |||||
| 176986_s_at | ||||||
| 176990_s_at | ||||||
| 177008_s_at | ||||||
| A_12_P172332 | ||||||
| A_12_P172333 | ||||||
| A_12_P172334 | ||||||
| A_12_P172335 | ||||||
| A_12_P172336 | ||||||
| Aff_Y55D5A_391.B | ||||||
| Aff_Y55D5A_392.A | ||||||
| GPL13914_Y55D5A.5 | ||||||
| GPL14144_Y55D5A.5a_5041-5100_0.932_8_A | ||||||
| GPL14144_Y55D5A.5a_5243-5302_0.949_3_C | ||||||
| GPL14144_Y55D5A.5a_5509-5568_0.964_1_B | ||||||
| GPL19516_CGZ0049315 | ||||||
| GPL19516_CGZ0049316 | ||||||
| GPL21109_Y55D5A.5a | ||||||
| GPL21109_Y55D5A.5b | ||||||
| GPL3518_CE27499 | ||||||
| GPL8304_CE_WBGene00000898_A | ||||||
| GPL8673_Y55D5A_5P04222 | ||||||
| GPL8673_Y55D5A_5P04487 | ||||||
| GPL8673_Y55D5A_5P05146 | ||||||
| GPL9450_Y55D5A.5 | ||||||
| cea2.c.24485 | ||||||
| Matching_cDNA | male_Nanopore_Roach_104313 | |||||
| L2_Nanopore_Roach_28778 | ||||||
| adult_Nanopore_Roach_103991 | ||||||
| L4_Nanopore_Roach_39345 | ||||||
| adult_Nanopore_Roach_88752 | ||||||
| RNAi_result (156) | ||||||
| Microarray_results (29) | ||||||
| Brief_identification | receptor protein-tyrosine kinase | Accession_evidence | UniProt | TR:A0A0K3AXA0 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 20 Feb 2015 00:00:00 | WBPerson1983 | ||||
| Remark | [140811 pad] Created this isoform based on the RNASeq splice data and the SL1 site. | Curator_confirmed | WBPerson1983 | |||
| Feature_evidence | WBsf161433 | |||||
| From_analysis | RNASeq | |||||
| Method | curated |
