WormBase Tree Display for CDS: F54D8.1
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| F54D8.1 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F54D8 | |||
| Structure | Source_exons | 1 | 415 | |||
| 468 | 1111 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q20778 | ||
| UniProt | UniProtAcc | Q20778 | ||||
| UniProt_GCRP | UniProtAcc | Q20778 | ||||
| AlphaFold | entry | Q20778 | ||||
| NCBI_protein | GI_number | GI:351059825 | ||||
| TREEFAM | TREEFAM_ID | TF321978 | ||||
| Protein_id | CHROMOSOME_III | CCD67406 | 1 | |||
| DB_remark | DPY-17 protein; contains similarity to Pfam domains PF01391 (Collagen triple helix repeat (20 copies)), PF01484 (Nematode cuticle collagen N-terminal domain); contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00001076 | ||||
| Corresponding_transcript | F54D8.1.1 | |||||
| Corresponding_protein | CE11066 | |||||
| Corresponding_PCR_product | TH:300D5 | |||||
| TH:341A9 | ||||||
| cenix:300-d5 | ||||||
| cenix:341-a9 | ||||||
| mv_F54D8.1 | ||||||
| sjj_F54D8.1 | ||||||
| Corresponding_oligo_set | 181096_at | |||||
| A_12_P119160 | ||||||
| A_12_P175994 | ||||||
| Aff_F54D8.1 | ||||||
| GPL13394_WBGene00001076 | ||||||
| GPL13914_F54D8.1 | ||||||
| GPL14144_F54D8.1_1003-1062_0.950_1_A | ||||||
| GPL14144_F54D8.1_428-487_0.844_16_C | ||||||
| GPL14144_F54D8.1_968-1027_0.943_2_B | ||||||
| GPL19516_CGZ0023795 | ||||||
| GPL21109_F54D8.1 | ||||||
| GPL3518_CE11066 | ||||||
| GPL8673_F54D8_1P00059 | ||||||
| GPL8673_F54D8_1P00356 | ||||||
| GPL8673_F54D8_1P00995 | ||||||
| GPL9450_F54D8.1 | ||||||
| cea2.c.19836 | ||||||
| Matching_cDNA (22) | ||||||
| RNAi_result | WBRNAi00073110 | |||||
| WBRNAi00002433 | ||||||
| WBRNAi00073111 | ||||||
| WBRNAi00025629 | ||||||
| WBRNAi00048322 | ||||||
| WBRNAi00048323 | ||||||
| WBRNAi00002758 | ||||||
| WBRNAi00032800 | ||||||
| Microarray_results (19) | ||||||
| Brief_identification | Nematode cuticle collagen N-terminal domain-containing protein | Accession_evidence | UniProt | TR:Q20778 | ||
| RNASeq_FPKM (74) | ||||||
| Remark | SL1 trans-spliced, see EST yk89c1.5 | |||||
| probably dpy-17, see WBG 14(4) page 31 | ||||||
| Associated_feature | WBsf003045 | |||||
| Method | curated |
