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WormBase Tree Display for Variation: WBVar00143269

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Name Class

WBVar00143269EvidencePaper_evidenceWBPaper00026992
WBPaper00006395
NamePublic_namee518
Other_nameF45G2.5.1:c.167C>T
CE16048:p.Ser56Leu
HGVSgCHROMOSOME_III:g.13429087G>A
Sequence_detailsSMapS_parentSequenceF45G2
Flanking_sequencesctgagaatacaattcgaaagaaaagtgcataagagaatgggtttgtttggcaactaatga
Mapping_targetF45G2
Type_of_mutationSubstitutionctPaper_evidenceWBPaper00026992
WBPaper00006395
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004175
WBStrain00029049
WBStrain00034353
LaboratoryCB
StatusLive
AffectsGeneWBGene00000255
TranscriptF45G2.5.1VEP_consequencemissense_variant
VEP_impactMODERATE
HGVScF45G2.5.1:c.167C>T
HGVSpCE16048:p.Ser56Leu
cDNA_position222
CDS_position167
Protein_position56
Exon_number3/6
Codon_changetCa/tTa
Amino_acid_changeS/L
InteractorWBInteraction000537317
IsolationMutagenEMSPaper_evidenceWBPaper00026992
GeneticsInterpolated_map_positionIII21.2139
Mapping_dataIn_2_point82
483
In_multi_point65
375
1658
1661
3055
3113
3114
3264
3265
3266
In_pos_neg_data355
3245
8141
DescriptionPhenotypeWBPhenotype:0000025Paper_evidenceWBPaper00000031
WBPaper00005747
Person_evidenceWBPerson261
Curator_confirmedWBPerson48
WBPerson712
WBPerson2987
Remarkblistered, especially around pharynxPerson_evidenceWBPerson261
Curator_confirmedWBPerson712
Table 1Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
EQ_annotationsLife_stageWBls:0000041PATO:0000460Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Phenotype_assayGenotypekaIs12 [col-19::gfp]Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
WBPhenotype:0000070Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
RemarkTable 1Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
Phenotype_assayGenotypekaIs12 [col-19::gfp]Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
WBPhenotype:0000229Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Remarksmall adultPerson_evidenceWBPerson261
Curator_confirmedWBPerson712
EQ_annotationsLife_stageWBls:0000041PATO:0000460Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Ease_of_scoringES3_Easy_to_scorePerson_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0000583Paper_evidenceWBPaper00005747
Person_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPerson2987
Remarksmall dumpyish adultPerson_evidenceWBPerson261
Curator_confirmedWBPerson712
Table 1Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
EQ_annotationsLife_stageWBls:0000041PATO:0000460Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Phenotype_assayGenotypekaIs12 [col-19::gfp]Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
WBPhenotype:0000961Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
RemarkTable 1Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
Phenotype_assayGenotypekaIs12 [col-19::gfp]Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
WBPhenotype:0001365Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Remarkabnormal bursa in adult male. Easy to score (ES3) in adult and late larvae.Person_evidenceWBPerson261
Curator_confirmedWBPerson712
EQ_annotationsLife_stageWBls:0000056PATO:0000460Person_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0001517Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
RemarkAuthors report "abnormal branched annuli (lateral hypodermis)" (Table 1)Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
Phenotype_assayGenotypekaIs12 [col-19::gfp]Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
Phenotype_not_observedWBPhenotype:0000505Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
RemarkMales are not Ram.Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
EQ_annotationsAnatomy_termWBbt:0006941PATO:0000460Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
Life_stageWBls:0000056PATO:0000460Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
Phenotype_assayTemperature20CPaper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
Genotypehim-5(e1490)Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
WBPhenotype:0001412Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
RemarkTable 1Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
Phenotype_assayGenotypekaIs12 [col-19::gfp]Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
WBPhenotype:0001426Paper_evidenceWBPaper00004883
Curator_confirmedWBPerson712
Phenotype_assayGenotypearIs37Paper_evidenceWBPaper00004883
Curator_confirmedWBPerson712
ReferenceWBPaper00001328
WBPaper00000031
WBPaper00004883
WBPaper00005747
MethodSubstitution_allele