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WormBase Tree Display for Variation: WBVar00143035

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Name Class

WBVar00143035EvidencePaper_evidenceWBPaper00004275
NamePublic_namee205
Other_nameJC8.10b.1:c.2708G>A
JC8.10a.1:c.2690G>A
CE29050:p.Trp903Ter
CE28239:p.Trp897Ter
HGVSgCHROMOSOME_IV:g.13263617C>T
Sequence_detailsSMapS_parentSequenceJC8
Flanking_sequencesagctgagcaaattcgacgatggcgatctatgattgtactgaatagtggagaaatggcatt
Mapping_targetJC8
Type_of_mutationSubstitutionga
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004127
WBStrain00005395
WBStrain00006188
WBStrain00008016
WBStrain00026968
WBStrain00027061
LaboratoryCB
StatusLive
AffectsGeneWBGene00006763
TranscriptJC8.10b.1VEP_consequencestop_gained
VEP_impactHIGH
HGVScJC8.10b.1:c.2708G>A
HGVSpCE29050:p.Trp903Ter
cDNA_position2713
CDS_position2708
Protein_position903
Exon_number10/12
Codon_changetGg/tAg
Amino_acid_changeW/*
JC8.10a.1VEP_consequencestop_gained
VEP_impactHIGH
HGVScJC8.10a.1:c.2690G>A
HGVSpCE28239:p.Trp897Ter
cDNA_position2693
CDS_position2690
Protein_position897
Exon_number9/11
Codon_changetGg/tAg
Amino_acid_changeW/*
InteractorWBInteraction000517566
WBInteraction000517568
GeneticsInterpolated_map_positionIV8.51097
Mapping_dataIn_2_point116
122
439
In_multi_point (12)
In_pos_neg_data832
4678
4685
4687
DescriptionPhenotype (18)
Phenotype_not_observedWBPhenotype:0000436Paper_evidenceWBPaper00028886
WBPaper00040857
Curator_confirmedWBPerson48
WBPerson712
RemarkLocalization of the synaptic protein SNB-1 is normal, based on expression analysis of SNB-1::VENUS.Paper_evidenceWBPaper00028886
Curator_confirmedWBPerson48
Mutation did not cause SNB-1::VENUS localization defects.Paper_evidenceWBPaper00040857
Curator_confirmedWBPerson712
WBPhenotype:0001426Paper_evidenceWBPaper00004883
Curator_confirmedWBPerson712
Variation_effectNullPaper_evidenceWBPaper00004883
Curator_confirmedWBPerson712
Phenotype_assayGenotypearIs37Paper_evidenceWBPaper00004883
Curator_confirmedWBPerson712
Reference (12)
MethodSubstitution_allele