WormBase Tree Display for Variation: WBVar00143025
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WBVar00143025 | Name | Public_name | e191 | |||||
---|---|---|---|---|---|---|---|---|
Other_name | CE36087:p.Gln16Ter | |||||||
CE05183:p.Gln16Ter | ||||||||
B0564.10a.1:c.46C>T | ||||||||
B0564.10b.1:c.46C>T | ||||||||
HGVSg | CHROMOSOME_IV:g.13119259C>T | |||||||
Sequence_details | SMap | S_parent | Sequence | B0564 | ||||
Flanking_sequences | gccacactgactgctatacaccagcagcag | agtcgcataatcggtttgttttattttttg | ||||||
Mapping_target | B0564 | |||||||
Type_of_mutation | Substitution | c | t | |||||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain (11) | ||||||||
Laboratory | CB | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00006766 | ||||||
Transcript | B0564.10b.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | |||||||
HGVSc | B0564.10b.1:c.46C>T | |||||||
HGVSp | CE36087:p.Gln16Ter | |||||||
cDNA_position | 170 | |||||||
CDS_position | 46 | |||||||
Protein_position | 16 | |||||||
Exon_number | 2/10 | |||||||
Codon_change | Cag/Tag | |||||||
Amino_acid_change | Q/* | |||||||
B0564.10a.1 | VEP_consequence | stop_gained | ||||||
VEP_impact | HIGH | |||||||
HGVSc | B0564.10a.1:c.46C>T | |||||||
HGVSp | CE05183:p.Gln16Ter | |||||||
cDNA_position | 283 | |||||||
CDS_position | 46 | |||||||
Protein_position | 16 | |||||||
Exon_number | 2/10 | |||||||
Codon_change | Cag/Tag | |||||||
Amino_acid_change | Q/* | |||||||
Interactor | WBInteraction000502940 | |||||||
WBInteraction000503400 | ||||||||
WBInteraction000525407 | ||||||||
WBInteraction000541742 | ||||||||
WBInteraction000558281 | ||||||||
WBInteraction000576769 | ||||||||
Genetics | Interpolated_map_position | IV | 8.20747 | |||||
Mapping_data | In_2_point | 97 | ||||||
121 | ||||||||
317 | ||||||||
555 | ||||||||
729 | ||||||||
730 | ||||||||
823 | ||||||||
4659 | ||||||||
In_multi_point (45) | ||||||||
In_pos_neg_data (11) | ||||||||
Description | Phenotype (28) | |||||||
Phenotype_not_observed | WBPhenotype:0000631 | Paper_evidence | WBPaper00035198 | |||||
Curator_confirmed | WBPerson712 | |||||||
Remark | Animals do not exhibit anterior convulsions when treated with pentylenetetrazole(PTZ). | Paper_evidence | WBPaper00035198 | |||||
Curator_confirmed | WBPerson712 | |||||||
Variation_effect | Null | Paper_evidence | WBPaper00035198 | |||||
Curator_confirmed | WBPerson712 | |||||||
Affected_by | Molecule | WBMol:00004251 | Paper_evidence | WBPaper00035198 | ||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0001426 | Paper_evidence | WBPaper00004883 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Phenotype_assay | Genotype | arIs37 | Paper_evidence | WBPaper00004883 | ||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0001645 | Paper_evidence | WBPaper00040284 | ||||||
Curator_confirmed | WBPerson2987 | |||||||
Remark | Table S2 | Paper_evidence | WBPaper00040284 | |||||
Curator_confirmed | WBPerson2987 | |||||||
WBPhenotype:0001652 | Paper_evidence | WBPaper00032446 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Reference (17) | ||||||||
Method | Substitution_allele |