Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00143022

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00143022EvidencePaper_evidenceWBPaper00027121
NamePublic_namee188
Other_namee188ts
H27M09.4.1:c.415G>C
CE25036:p.Gly139Arg
HGVSgCHROMOSOME_I:g.6844486G>C
Sequence_detailsSMapS_parentSequenceH27M09
Flanking_sequencesacatgccaacaaggaaaggctggaccaccagaccaccaggagatgatggaaaggacggaa
Mapping_targetH27M09
Type_of_mutationSubstitutiongcPaper_evidenceWBPaper00027121
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
Strain (62)
LaboratoryCB
StatusLive
AffectsGeneWBGene00001075
TranscriptH27M09.4.1 (12)
InteractorWBInteraction000518462
GeneticsInterpolated_map_positionI1.37773
Mapping_dataIn_2_point5
241
242
5116
5118
6055
In_multi_point (66)
In_pos_neg_data (55)
DescriptionPhenotypeWBPhenotype:0000035Paper_evidenceWBPaper00000031
Curator_confirmedWBPerson48
WBPhenotype:0000062Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Remarkts lethal (25C). Lethality enhanced by Smg. ES3 (all stages 20C).Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Temperature_sensitiveHeat_sensitive25Person_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0000519Paper_evidenceWBPaper00033444
Curator_confirmedWBPerson2021
RemarkMutant strains tested showed altered fitness compared to wild type when exposed to different bacterial environments such as E. coli, M. luteus, and Pseudomonas sp.and B. megateriumPaper_evidenceWBPaper00033444
Curator_confirmedWBPerson2021
WBPhenotype:0000583Paper_evidenceWBPaper00000031
Person_evidenceWBPerson261
Curator_confirmedWBPerson48
WBPerson712
RemarkMedium dumpy adult, strong dumpy L1 (20C). Easy to score (ES3) at all stages (20C).Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Phenotype_assayTemperature20Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Ease_of_scoringES3_Easy_to_scorePerson_evidenceWBPerson261
Curator_confirmedWBPerson712
Phenotype_not_observedWBPhenotype:0000505Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
RemarkMales are not Ram.Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
EQ_annotationsAnatomy_termWBbt:0006941PATO:0000460Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
Life_stageWBls:0000056PATO:0000460Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
Phenotype_assayTemperature20CPaper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
Genotypehim-5(e1490)Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
WBPhenotype:0001426Paper_evidenceWBPaper00004883
Curator_confirmedWBPerson712
Phenotype_assayGenotypearIs37Paper_evidenceWBPaper00004883
Curator_confirmedWBPerson712
ReferenceWBPaper00001328
WBPaper00000031
WBPaper00004883
WBPaper00024024
WBPaper00014397
WBPaper00016102
WBPaper00025792
WBPaper00033444
WBPaper00061175
RemarkCreated by WBPerson51134 from the NN_VFP_triage_pipeline
Variation stub/paper connection generated from the May 2021 NN VFP dataset.
MethodSubstitution_allele