WormBase Tree Display for Gene: WBGene00022495

WBGene00022495 SMap: S_parent: Sequence: Y119D3B
  Identity: Version: 3
    Name: CGC_name: fbxa-78 Person_evidence: WBPerson655
      Sequence_name: Y119D3B.19
      Molecular_name: Y119D3B.19
        Y119D3B.19.1
        CE15008
      Other_name: CELE_Y119D3B.19 Accession_evidence: NDB BX284603
      Public_name: fbxa-78
    DB_info: Database: AceView gene 3C346
        WormQTL gene WBGene00022495
        WormFlux gene WBGene00022495
        NDB locus_tag CELE_Y119D3B.19
        NCBI gene 191046
        RefSeq protein NM_064957.7
        TREEFAM TREEFAM_ID TF322006
        TrEMBL UniProtAcc G5EDF8
        UniProt_GCRP UniProtAcc G5EDF8
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 12 Dec 2005 15:18:56 WBPerson2970 Name_change: CGC_name: fbxa-78
        3 10 Jun 2014 12:12:12 WBPerson1983 Event: Acquires_merge: WBGene00043944
      Acquires_merge: WBGene00043944
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxa
    Allele (33)
    RNASeq_FPKM (74)
    Ortholog: WBGene00042835 Caenorhabditis briggsae From_analysis: Inparanoid_8
      WBGene00122765 Caenorhabditis japonica From_analysis: Inparanoid_8
      CSP28.g15362 Caenorhabditis panamensis From_analysis: WormBase-Compara
      chrIII_pilon.g6909 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00065925 Caenorhabditis remanei From_analysis: WormBase-Compara
    Paralog (199)
    Structured_description: Concise_description: fbxa-78 encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; FBXA-78 also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in intestine based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray and RNA-seq studies. Is affected by fourteen chemicals including hydrogen sulfide; methylmercury hydroxide; and sesamin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; FTH domain; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y119D3B.19
    Corresponding_transcript: Y119D3B.19.1
    Associated_feature: WBsf991260
      WBsf991261
      WBsf226199
  Experimental_info: RNAi_result (11)
    Expr_pattern: Expr1026821
      Expr1159018
      Expr2011576
      Expr2029816
    Drives_construct: WBCnstr00024204
    Construct_product: WBCnstr00024204
    Microarray_results (23)
    Expression_cluster (97)
    Interaction: WBInteraction000504152
  Map_info: Map: III Position: -22.5751
    Positive: Positive_clone: Y119D3B Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00041771
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    [140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag.
  Method: Gene