WormBase Tree Display for Gene: WBGene00021843
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| WBGene00021843 | SMap | S_parent | Sequence | Y54E10BR | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nobh-1 | Person_evidence | WBPerson5956 | |||||
| Sequence_name | Y54E10BR.4 | ||||||||
| Molecular_name | Y54E10BR.4a | ||||||||
| Y54E10BR.4a.1 | |||||||||
| CE27481 | |||||||||
| Y54E10BR.4b | |||||||||
| CE54586 | |||||||||
| Y54E10BR.4b.1 | |||||||||
| Other_name | Y54E10BR.e | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y54E10BR.f | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y54E10BR.g | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y54E10BR.4 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | nobh-1 | ||||||||
| DB_info | Database | AceView | gene | 1D589 | |||||
| WormQTL | gene | WBGene00021843 | |||||||
| WormFlux | gene | WBGene00021843 | |||||||
| NDB | locus_tag | CELE_Y54E10BR.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021843|UniProtKB=Q9N3D3 | |||||||
| family | PTHR12814 | ||||||||
| NCBI | gene | 171874 | |||||||
| RefSeq | protein | NM_001424977.1 | |||||||
| NM_058689.6 | |||||||||
| TrEMBL | UniProtAcc | Q9N3D3 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N3D3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 26 Jan 2024 23:28:21 | WBPerson51134 | Name_change | CGC_name | nobh-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nobh | ||||||||
| Allele (144) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Contained_in_operon | CEOP1080 | ||||||||
| Ortholog (35) | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA endonuclease activity. Predicted to be involved in maturation of SSU-rRNA. Located in cytoplasm. Expressed in neurons. Is an ortholog of human NOB1 (NIN1 (RPN12) binding protein 1 homolog). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y54E10BR.4a | |||||||
| Y54E10BR.4b | |||||||||
| Corresponding_CDS_history | Y54E10BR.4a:wp50 | ||||||||
| Y54E10BR.4b:wp50 | |||||||||
| Corresponding_transcript | Y54E10BR.4a.1 | ||||||||
| Y54E10BR.4b.1 | |||||||||
| Other_sequence (28) | |||||||||
| Associated_feature | WBsf643127 | ||||||||
| WBsf980981 | |||||||||
| WBsf983045 | |||||||||
| WBsf983046 | |||||||||
| WBsf1009443 | |||||||||
| WBsf217360 | |||||||||
| Experimental_info | RNAi_result (24) | ||||||||
| Expr_pattern | Expr4584 | ||||||||
| Expr9578 | |||||||||
| Expr1016632 | |||||||||
| Expr1039587 | |||||||||
| Expr1160799 | |||||||||
| Expr2007894 | |||||||||
| Expr2026136 | |||||||||
| Drives_construct | WBCnstr00012093 | ||||||||
| Construct_product | WBCnstr00014143 | ||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (129) | |||||||||
| Interaction (168) | |||||||||
| Map_info | Map | I | Position | -4.94196 | |||||
| Positive | Positive_clone | Y54E10BR | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027740 | ||||||||
| WBPaper00029254 | |||||||||
| WBPaper00034662 | |||||||||
| WBPaper00038444 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| WBPaper00064934 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
