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WormBase Tree Display for Gene: WBGene00021671

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Name Class

WBGene00021671SMapS_parentSequenceY48G1BM
IdentityVersion3
NameSequence_nameY48G1BM.6
Molecular_nameY48G1BM.6a
Y48G1BM.6a.1
CE54310
Y48G1BM.6d
Other_nameCELE_Y48G1BM.6Accession_evidenceNDBBX284601
Public_nameY48G1BM.6
DB_infoDatabaseAceViewgene1A708
WormQTLgeneWBGene00021671
WormFluxgeneWBGene00021671
NDBlocus_tagCELE_Y48G1BM.6
NCBIgene190039
RefSeqproteinNR_175829.1
NM_001393046.1
RNAcentralURSidURS000242F08F
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:04WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
209 Jan 2009 16:50:33WBPerson1849EventAcquires_mergeWBGene00021670
310 Nov 2020 23:53:02WBPerson51134EventSplit_intoWBGene00306121
Acquires_mergeWBGene00021670
Split_intoWBGene00306121
StatusLive
Gene_infoBiotypeSO:0001217
Allele (67)
RNASeq_FPKM (74)
Ortholog (11)
Paralog (20)
Structured_descriptionAutomated_descriptionEnriched in neurons and retrovesicular ganglion based on RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-2; and hsf-1 based on tiling array; microarray; and RNA-seq studies. Is affected by nine chemicals including multi-walled carbon nanotube; Alovudine; and metformin based on RNA-seq studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS290 version of WormBase
Date_last_updated11 Sep 2023 00:00:00
Molecular_infoCorresponding_CDSY48G1BM.6a
Corresponding_CDS_historyY48G1BM.6:wp199
Y48G1BM.6:wp214
Y48G1BM.6:wp265
Corresponding_transcriptY48G1BM.6d
Y48G1BM.6a.1
Corresponding_pseudogene_historyY48G1BM.6:wp279
Associated_feature (11)
Experimental_infoRNAi_resultWBRNAi00055472Inferred_automaticallyRNAi_primary
WBRNAi00056947Inferred_automaticallyRNAi_primary
WBRNAi00056946Inferred_automaticallyRNAi_primary
WBRNAi00058283Inferred_automaticallyRNAi_primary
WBRNAi00019988Inferred_automaticallyRNAi_primary
Expr_patternExpr1013491
Expr1039488
Expr1160392
Expr2007682
Expr2025924
Microarray_results (16)
Expression_cluster (146)
InteractionWBInteraction000373465
WBInteraction000373467
WBInteraction000373469
Map_infoPositivePositive_cloneY48G1BMInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionI-19.1182
Remark[2020-11-10T23:53:02.969Z WBPerson51134] Gene Split creating Y48G1BM.10 WBGene00306121: Seems to be a fusion of CDS Y48G1BM.6 and CDS Y48G1BM.10Curator_confirmedWBPerson51134
[2020-11-10T23:54:39.038Z WBPerson51134] Gene Updated: Biotype changed to CDSCurator_confirmedWBPerson51134
MethodGene