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WormBase Tree Display for Gene: WBGene00021580

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Name Class

WBGene00021580SMapS_parentSequenceY46C8AL
IdentityVersion2
NameCGC_nameclec-174Person_evidenceWBPerson2531
Sequence_nameY46C8AL.2
Molecular_nameY46C8AL.2
Y46C8AL.2.1
CE40157
Other_nameY46C8AL.bCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
Y46C8AL.fCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
Y46C8AL.gCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y46C8AL.2Accession_evidenceNDBBX284604
Public_nameclec-174
DB_infoDatabaseAceViewgene4E700
WormQTLgeneWBGene00021580
WormFluxgeneWBGene00021580
NDBlocus_tagCELE_Y46C8AL.2
PanthergeneCAEEL|WormBase=WBGene00021580|UniProtKB=Q9N3W8
familyPTHR23062
NCBIgene189943
RefSeqproteinNM_068040.4
TREEFAMTREEFAM_IDTF317818
TrEMBLUniProtAccQ9N3W8
UniProt_GCRPUniProtAccQ9N3W8
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:04WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
209 Oct 2007 15:40:27WBPerson2970Name_changeCGC_nameclec-174
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classclec
Allele (43)
RNASeq_FPKM (74)
GO_annotation00093693
Ortholog (23)
Paralog (44)
Structured_descriptionAutomated_descriptionInvolved in defense response to Gram-negative bacterium.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS290 version of WormBase
Date_last_updated11 Sep 2023 00:00:00
Molecular_infoCorresponding_CDSY46C8AL.2
Corresponding_CDS_historyY46C8AL.2:wp154
Y46C8AL.2:wp156
Corresponding_transcriptY46C8AL.2.1
Other_sequenceTcir_isotig09580
Experimental_infoRNAi_resultWBRNAi00092238Inferred_automaticallyRNAi_primary
WBRNAi00020641Inferred_automaticallyRNAi_primary
Expr_patternExpr1027586
Expr1160117
Drives_constructWBCnstr00024497
Construct_productWBCnstr00024497
Microarray_results (18)
Expression_cluster (246)
InteractionWBInteraction000544080
WBInteraction000571164
Map_infoMapIVPosition-1.501Error0.01326
PositivePositive_cloneY46C8ALInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00031686
WBPaper00039120
WBPaper00055435
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene