WormBase Tree Display for Gene: WBGene00021427
expand all nodes | collapse all nodes | view schema
| WBGene00021427 | SMap | S_parent | Sequence | Y38F2AR | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sec-61.B | |||||||
| Sequence_name | Y38F2AR.9 | ||||||||
| Molecular_name | Y38F2AR.9 | ||||||||
| Y38F2AR.9.1 | |||||||||
| CE27617 | |||||||||
| Other_name | CELE_Y38F2AR.9 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | sec-61.B | ||||||||
| DB_info | Database | AceView | gene | 4D152 | |||||
| WormQTL | gene | WBGene00021427 | |||||||
| WormFlux | gene | WBGene00021427 | |||||||
| NDB | locus_tag | CELE_Y38F2AR.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021427|UniProtKB=Q95XS2 | |||||||
| family | PTHR13509 | ||||||||
| NCBI | gene | 177027 | |||||||
| RefSeq | protein | NM_067796.9 | |||||||
| TREEFAM | TREEFAM_ID | TF313144 | |||||||
| TrEMBL | UniProtAcc | Q95XS2 | |||||||
| UniProt_GCRP | UniProtAcc | Q95XS2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 20 May 2019 14:10:26 | WBPerson1983 | Name_change | CGC_name | sec-61.B | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sec | ||||||||
| Allele | WBVar01499166 | ||||||||
| WBVar01498316 | |||||||||
| WBVar01499633 | |||||||||
| WBVar02034363 | |||||||||
| WBVar00250946 | |||||||||
| WBVar01803457 | |||||||||
| WBVar00892446 | |||||||||
| WBVar00892447 | |||||||||
| WBVar00419268 | |||||||||
| WBVar01500062 | |||||||||
| Strain | WBStrain00007585 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (37) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane, translocation and post-translational protein targeting to membrane, translocation. Predicted to be located in membrane. Predicted to be part of Sec61 translocon complex. Is an ortholog of human SEC61B (SEC61 translocon subunit beta). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y38F2AR.9 | |||||||
| Corresponding_transcript | Y38F2AR.9.1 | ||||||||
| Other_sequence (74) | |||||||||
| Associated_feature | WBsf667775 | ||||||||
| WBsf229812 | |||||||||
| WBsf229813 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00056056 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr13442 | ||||||||
| Expr1014438 | |||||||||
| Expr1039361 | |||||||||
| Expr1159579 | |||||||||
| Expr2007317 | |||||||||
| Expr2025552 | |||||||||
| Construct_product | WBCnstr00039536 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (192) | |||||||||
| Interaction (26) | |||||||||
| Map_info | Map | IV | Position | -7.67607 | |||||
| Positive | Positive_clone | Y38F2AR | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025393 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00053387 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061328 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
