WormBase Tree Display for Gene: WBGene00020451
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WBGene00020451 | SMap | S_parent | Sequence | T12B5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | fbxa-11 | Person_evidence | WBPerson655 | |||||
Sequence_name | T12B5.4 | ||||||||
Molecular_name | T12B5.4 | ||||||||
T12B5.4.1 | |||||||||
CE20062 | |||||||||
Other_name | CELE_T12B5.4 | Accession_evidence | NDB | BX284603 | |||||
Public_name | fbxa-11 | ||||||||
DB_info | Database | AceView | gene | 3B569 | |||||
WormQTL | gene | WBGene00020451 | |||||||
WormFlux | gene | WBGene00020451 | |||||||
NDB | locus_tag | CELE_T12B5.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00020451|UniProtKB=Q9TZ23 | |||||||
family | PTHR23015 | ||||||||
NCBI | gene | 188443 | |||||||
RefSeq | protein | NM_064902.2 | |||||||
TREEFAM | TREEFAM_ID | TF322006 | |||||||
TrEMBL | UniProtAcc | Q9TZ23 | |||||||
UniProt_GCRP | UniProtAcc | Q9TZ23 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 12 Dec 2005 15:18:56 | WBPerson2970 | Name_change | CGC_name | fbxa-11 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbxa | ||||||||
Allele (146) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (29) | |||||||||
Paralog (225) | |||||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in AVE; Z1.p; Z4.a; body wall muscle cell; and male distal tip cell based on tiling array and RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by Cry5B and bortezomib based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T12B5.4 | |||||||
Corresponding_transcript | T12B5.4.1 | ||||||||
Associated_feature | WBsf644935 | ||||||||
WBsf224419 | |||||||||
WBsf224420 | |||||||||
Experimental_info | RNAi_result | WBRNAi00007118 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00053188 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00053186 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00007149 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00006598 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00018632 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00035505 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00053185 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1026133 | ||||||||
Expr1156780 | |||||||||
Expr2011464 | |||||||||
Expr2029702 | |||||||||
Drives_construct | WBCnstr00025129 | ||||||||
Construct_product | WBCnstr00025129 | ||||||||
Microarray_results (17) | |||||||||
Expression_cluster (123) | |||||||||
Interaction | WBInteraction000030756 | ||||||||
WBInteraction000291995 | |||||||||
Map_info | Map | III | Position | -24.9766 | Error | 0.011611 | |||
Positive | Positive_clone | T12B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00012854 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |