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WormBase Tree Display for Gene: WBGene00018353

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Name Class

WBGene00018353SMapS_parentSequenceF42G2
IdentityVersion2
NameCGC_namefbxa-182Person_evidenceWBPerson655
Sequence_nameF42G2.4
Molecular_nameF42G2.4
F42G2.4.1
CE53955
Other_nameCELE_F42G2.4Accession_evidenceNDBBX284602
Public_namefbxa-182
DB_infoDatabaseWormQTLgeneWBGene00018353
WormFluxgeneWBGene00018353
NDBlocus_tagCELE_F42G2.4
NCBIgene173594
RefSeqproteinNM_001377723.1
TREEFAMTREEFAM_IDTF322500
TrEMBLUniProtAccQ6HAE7
UniProt_GCRPUniProtAccQ6HAE7
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:00WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
201 Mar 2007 11:55:19WBPerson2970Name_changeCGC_namefbxa-182
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classfbxa
Allele (159)
StrainWBStrain00047576
RNASeq_FPKM (74)
Ortholog (29)
Paralog (219)
Structured_descriptionConcise_descriptionThis gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.Paper_evidenceWBPaper00012854
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnriched in RICL; RICR; and intestine based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and glp-1 based on microarray; tiling array; and RNA-seq studies. Is affected by twenty chemicals including 1-methylnicotinamide; methylmercuric chloride; and D-glucopyranose based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF42G2.4
Corresponding_CDS_historyF42G2.4:wp274
F42G2.4a:wp125
F42G2.4a:wp151
F42G2.4b:wp125
F42G2.4b:wp151
Corresponding_transcriptF42G2.4.1
Associated_featureWBsf665396
WBsf222764
Experimental_infoRNAi_resultWBRNAi00014834Inferred_automaticallyRNAi_primary
WBRNAi00047113Inferred_automaticallyRNAi_primary
Expr_patternExpr1021429
Expr1150980
Expr2011502
Expr2029739
Drives_constructWBCnstr00026587
Construct_productWBCnstr00026587
Microarray_results (15)
Expression_cluster (230)
Interaction (27)
Map_infoMapIIPosition-13.8292Error0.00069
PositivePositive_cloneF42G2Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00012854
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene