WormBase Tree Display for Gene: WBGene00018200
expand all nodes | collapse all nodes | view schema
| WBGene00018200 | SMap | S_parent | Sequence | F39E9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | btb-17 | Person_evidence | WBPerson261 | |||||
| Sequence_name | F39E9.11 | ||||||||
| Molecular_name | F39E9.11 | ||||||||
| F39E9.11.1 | |||||||||
| CE32653 | |||||||||
| Other_name | CELE_F39E9.11 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | btb-17 | ||||||||
| DB_info | Database | AceView | gene | 2D585 | |||||
| WormQTL | gene | WBGene00018200 | |||||||
| WormFlux | gene | WBGene00018200 | |||||||
| NDB | locus_tag | CELE_F39E9.11 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018200|UniProtKB=Q8ITZ2 | |||||||
| family | PTHR22744 | ||||||||
| NCBI | gene | 173673 | |||||||
| RefSeq | protein | NM_182200.5 | |||||||
| TREEFAM | TREEFAM_ID | TF322195 | |||||||
| TrEMBL | UniProtAcc | Q8ITZ2 | |||||||
| UniProt_GCRP | UniProtAcc | Q8ITZ2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 07 Nov 2007 11:51:23 | WBPerson2970 | Name_change | CGC_name | btb-17 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | btb | ||||||||
| Allele (71) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (150) | |||||||||
| Paralog (29) | |||||||||
| Structured_description | Automated_description | Enriched in ASER; PQR; and intestine based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and age-1 based on microarray; tiling array; and RNA-seq studies. Is affected by fourteen chemicals including rotenone; Tunicamycin; and mianserin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: SKP1/BTB/POZ domain superfamily and BTB/POZ domain. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F39E9.11 | |||||||
| Corresponding_transcript | F39E9.11.1 | ||||||||
| Other_sequence | CR00014 | ||||||||
| CRC04954_1 | |||||||||
| CBC07391_1 | |||||||||
| CR00107 | |||||||||
| Associated_feature | WBsf220997 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00046776 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1011821 | ||||||||
| Expr1150648 | |||||||||
| Expr2009666 | |||||||||
| Expr2027905 | |||||||||
| Drives_construct | WBCnstr00026706 | ||||||||
| Construct_product | WBCnstr00026706 | ||||||||
| Microarray_results (12) | |||||||||
| Expression_cluster (164) | |||||||||
| Map_info | Map | II | Position | -6.88725 | Error | 0.015833 | |||
| Positive | Positive_clone | F39E9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00065331 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
