WormBase Tree Display for Gene: WBGene00017349
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WBGene00017349 | SMap | S_parent | Sequence | F10E7 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | farl-11 | Person_evidence | WBPerson3760 | |||||
WBPerson75 | |||||||||
Sequence_name | F10E7.8 | ||||||||
Molecular_name | F10E7.8a | ||||||||
F10E7.8a.1 | |||||||||
CE43761 | |||||||||
F10E7.8b | |||||||||
CE51762 | |||||||||
F10E7.8c | |||||||||
CE51781 | |||||||||
F10E7.8b.1 | |||||||||
F10E7.8c.1 | |||||||||
Other_name | CELE_F10E7.8 | Accession_evidence | NDB | BX284602 | |||||
Public_name | farl-11 | ||||||||
DB_info | Database | AceView | gene | 2H392 | |||||
WormQTL | gene | WBGene00017349 | |||||||
WormFlux | gene | WBGene00017349 | |||||||
NDB | locus_tag | CELE_F10E7.8 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00017349|UniProtKB=A0A1D3PCL0 | |||||||
family | PTHR13239 | ||||||||
NCBI | gene | 174165 | |||||||
RefSeq | protein | NM_063066.9 | |||||||
NM_001346631.3 | |||||||||
NM_001346630.2 | |||||||||
TrEMBL | UniProtAcc | A0A1D3PD01 | |||||||
A0A1D3PCL0 | |||||||||
Q19300 | |||||||||
UniProt_GCRP | UniProtAcc | A0A1D3PCL0 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 18 Apr 2008 13:26:44 | WBPerson2970 | Name_change | CGC_name | farl-11 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | farl | ||||||||
Allele (35) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00002478 | ||||||||
00002479 | |||||||||
00064269 | |||||||||
00064270 | |||||||||
00064271 | |||||||||
00064272 | |||||||||
00064273 | |||||||||
Contained_in_operon | CEOP2288 | ||||||||
Ortholog (39) | |||||||||
Structured_description | Concise_description | farl-11 is an ortholog of human STRIP2 (striatin interacting protein 2) and STRIP1 (striatin interacting protein 1); FARL-11 is required for normal ER dynamics and the membrane localization of GLP-1 in the germline; translation of farl-11 mRNA in the mitotic germline is promoted by PUF-8; FARL-11::GFP expressed under the endogenous promoter and 3' UTR localizes to endoplasmic reticulum and the nuclear membrane in the germline and embryos. | Paper_evidence | WBPaper00049965 | |||||
Person_evidence | WBPerson2530 | ||||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 15 Dec 2016 00:00:00 | ||||||||
Automated_description | Involved in endoplasmic reticulum organization; epithelial tube morphogenesis; and positive regulation of endocytic recycling. Located in endoplasmic reticulum. Expressed in germ line. Is an ortholog of human STRIP1 (striatin interacting protein 1) and STRIP2 (striatin interacting protein 2). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F10E7.8a | |||||||
F10E7.8b | |||||||||
F10E7.8c | |||||||||
Corresponding_CDS_history | F10E7.8:wp203 | ||||||||
Corresponding_transcript | F10E7.8a.1 | ||||||||
F10E7.8b.1 | |||||||||
F10E7.8c.1 | |||||||||
Other_sequence (56) | |||||||||
Associated_feature (11) | |||||||||
Experimental_info | RNAi_result | WBRNAi00022322 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00076290 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00044263 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr4805 | ||||||||
Expr13023 | |||||||||
Expr1022554 | |||||||||
Expr1037459 | |||||||||
Expr1148221 | |||||||||
Expr2011429 | |||||||||
Expr2029667 | |||||||||
Drives_construct | WBCnstr00027366 | ||||||||
WBCnstr00038374 | |||||||||
Construct_product | WBCnstr00001417 | ||||||||
WBCnstr00027366 | |||||||||
WBCnstr00038374 | |||||||||
Microarray_results (19) | |||||||||
Expression_cluster (125) | |||||||||
Interaction (57) | |||||||||
Map_info | Map | II | Position | 0.494201 | Error | 0.00019 | |||
Positive | Positive_clone | F10E7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00030897 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00047481 | |||||||||
WBPaper00048228 | |||||||||
WBPaper00049965 | |||||||||
WBPaper00052206 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00062623 | |||||||||
WBPaper00063115 | |||||||||
WBPaper00065585 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |