WormBase Tree Display for Gene: WBGene00016613
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| WBGene00016613 | SMap | S_parent | Sequence | C43G2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | best-9 | Person_evidence | WBPerson260 | |||||
| Sequence_name | C43G2.4 | ||||||||
| Molecular_name | C43G2.4 | ||||||||
| C43G2.4.1 | |||||||||
| CE34750 | |||||||||
| C43G2.4.2 | |||||||||
| C43G2.4.3 | |||||||||
| Other_name | CELE_C43G2.4 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | best-9 | ||||||||
| DB_info | Database | AceView | gene | 4H329 | |||||
| WormQTL | gene | WBGene00016613 | |||||||
| WormFlux | gene | WBGene00016613 | |||||||
| NDB | locus_tag | CELE_C43G2.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016613|UniProtKB=Q94175 | |||||||
| family | PTHR10736 | ||||||||
| NCBI | gene | 183419 | |||||||
| RefSeq | protein | NM_001392319.1 | |||||||
| SwissProt | UniProtAcc | Q94175 | |||||||
| UniProt_GCRP | UniProtAcc | Q94175 | |||||||
| OMIM | gene | 607854 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 07 Feb 2012 16:30:56 | WBPerson2970 | Name_change | CGC_name | best-9 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | best | ||||||||
| Allele (63) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00087264 | ||||||||
| 00087265 | |||||||||
| 00087266 | |||||||||
| 00087267 | |||||||||
| 00087268 | |||||||||
| 00087269 | |||||||||
| 00087270 | |||||||||
| 00087271 | |||||||||
| 00087272 | |||||||||
| 00122196 | |||||||||
| Ortholog (35) | |||||||||
| Paralog (26) | |||||||||
| Structured_description | Automated_description | Predicted to enable chloride channel activity. Predicted to be involved in chloride transmembrane transport. Predicted to be located in plasma membrane. Predicted to be part of chloride channel complex. Human ortholog(s) of this gene implicated in autosomal dominant vitreoretinochoroidopathy and retinal degeneration (multiple). Is an ortholog of human BEST1 (bestrophin 1) and BEST3 (bestrophin 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110396 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12703) | ||||
| DOID:4448 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12703) | ||||||
| DOID:0050661 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12703) | ||||||
| DOID:0050662 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12703) | ||||||
| DOID:0111569 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12703) | ||||||
| Molecular_info | Corresponding_CDS | C43G2.4 | |||||||
| Corresponding_CDS_history | C43G2.4:wp104 | ||||||||
| Corresponding_transcript | C43G2.4.1 | ||||||||
| C43G2.4.2 | |||||||||
| C43G2.4.3 | |||||||||
| Other_sequence (12) | |||||||||
| Associated_feature | WBsf646021 | ||||||||
| WBsf660234 | |||||||||
| WBsf660235 | |||||||||
| WBsf996768 | |||||||||
| WBsf1017539 | |||||||||
| WBsf228426 | |||||||||
| WBsf228427 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00029771 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00042397 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1028232 | ||||||||
| Expr1037136 | |||||||||
| Expr1146389 | |||||||||
| Expr2009614 | |||||||||
| Expr2027852 | |||||||||
| Drives_construct | WBCnstr00027937 | ||||||||
| Construct_product | WBCnstr00027937 | ||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (99) | |||||||||
| Interaction | WBInteraction000275271 | ||||||||
| WBInteraction000322439 | |||||||||
| WBInteraction000439552 | |||||||||
| Map_info | Map | IV | Position | 3.20546 | |||||
| Positive | Positive_clone | C43G2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064809 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
