WormBase Tree Display for Gene: WBGene00015008

WBGene00015008 SMap: S_parent: Sequence: B0041
  Identity: Version: 2
    Name: CGC_name: lmd-2 Person_evidence: WBPerson8574
      Sequence_name: B0041.3
      Molecular_name: B0041.3
        B0041.3.1
        CE51424
      Other_name: CELE_B0041.3 Accession_evidence: NDB BX284601
      Public_name: lmd-2
    DB_info: Database: AceView gene 1F213
        WormQTL gene WBGene00015008
        WormFlux gene WBGene00015008
        NDB locus_tag CELE_B0041.3
        Panther gene CAEEL|WormBase=WBGene00015008|UniProtKB=O02055
          family PTHR20932
        NCBI gene 172073
        RefSeq protein NM_059014.3
        TREEFAM TREEFAM_ID TF318444
        TrEMBL UniProtAcc O02055
        UniProt_GCRP UniProtAcc O02055
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 25 Jan 2013 14:30:54 WBPerson2970 Name_change: CGC_name: lmd-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lmd
    Allele (21)
    RNASeq_FPKM (74)
    Ortholog (32)
    Paralog: WBGene00009665 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Enriched in body wall musculature; intestine; neurons; and retrovesicular ganglion based on microarray and RNA-seq studies. Is affected by several genes including daf-12; sir-2.1; and clk-1 based on microarray; tiling array; and RNA-seq studies. Is affected by seven chemicals including Doxycycline; Ketamine; and Quercetin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: LysM domain superfamily; LysM domain; and LysM and putative peptidoglycan-binding domain-containing protein 1-4. Is an ortholog of human LYSMD1 (LysM domain containing 1) and LYSMD2 (LysM domain containing 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: B0041.3
    Corresponding_CDS_history: B0041.3:wp252
    Corresponding_transcript: B0041.3.1
    Other_sequence: MI01003
      CV199347.1
    Associated_feature: WBsf643226
      WBsf983455
      WBsf217555
  Experimental_info: RNAi_result: WBRNAi00023624 Inferred_automatically: RNAi_primary
      WBRNAi00002828 Inferred_automatically: RNAi_primary
      WBRNAi00023012 Inferred_automatically: RNAi_primary
      WBRNAi00027965 Inferred_automatically: RNAi_primary
      WBRNAi00038687 Inferred_automatically: RNAi_primary
      WBRNAi00023913 Inferred_automatically: RNAi_primary
      WBRNAi00090772 Inferred_automatically: RNAi_primary
      WBRNAi00023113 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1024960
      Expr1036415
      Expr1142894
      Expr2013231
      Expr2031462
    Drives_construct: WBCnstr00029163
    Construct_product: WBCnstr00029163
    Microarray_results (18)
    Expression_cluster (94)
    Interaction: WBInteraction000194521
      WBInteraction000237241
      WBInteraction000248467
      WBInteraction000249449
      WBInteraction000358296
      WBInteraction000394851
      WBInteraction000417213
      WBInteraction000449092
      WBInteraction000474744
  Map_info: Map: I Position: -1.03468
    Positive: Positive_clone: B0041 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00031295
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene