WormBase Tree Display for Gene: WBGene00012980
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| WBGene00012980 | SMap | S_parent | Sequence | Y48B6A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | efhd-1 | Paper_evidence | WBPaper00041587 | |||||
| Sequence_name | Y48B6A.6 | ||||||||
| Molecular_name | Y48B6A.6a | ||||||||
| Y48B6A.6a.1 | |||||||||
| CE32970 | |||||||||
| Y48B6A.6b | |||||||||
| CE41852 | |||||||||
| Y48B6A.6c | |||||||||
| CE41853 | |||||||||
| Y48B6A.6a.2 | |||||||||
| Y48B6A.6b.1 | |||||||||
| Y48B6A.6c.1 | |||||||||
| Other_name | EFhd2 orthologue | Paper_evidence | WBPaper00038072 | ||||||
| CELE_Y48B6A.6 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | efhd-1 | ||||||||
| DB_info | Database | AceView | gene | 2O479 | |||||
| WormQTL | gene | WBGene00012980 | |||||||
| WormFlux | gene | WBGene00012980 | |||||||
| NDB | locus_tag | CELE_Y48B6A.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012980|UniProtKB=Q9U2A6 | |||||||
| family | PTHR13025 | ||||||||
| NCBI | gene | 175073 | |||||||
| RefSeq | protein | NM_064560.7 | |||||||
| NM_182166.7 | |||||||||
| NM_001129185.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF320736 | |||||||
| TrEMBL | UniProtAcc | Q8I0Z7 | |||||||
| A8XMZ5 | |||||||||
| Q9U2A6 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9U2A6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 28 Sep 2012 14:29:00 | WBPerson2970 | Name_change | CGC_name | efhd-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | efhd | ||||||||
| Allele (338) | |||||||||
| Strain | WBStrain00001460 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00005433 | ||||||||
| 00119935 | |||||||||
| Ortholog (37) | |||||||||
| Structured_description | Concise_description | efhd-1 encodes the C. elegans ortholog of the mammalian EF hand domain-containing proteins EFHD1 and EFHD2; large-scale expression studies report that efhd-1 is expressed in the pharynx, the body wall muscle, and the nervous system. | Paper_evidence | WBPaper00031006 | |||||
| WBPaper00038072 | |||||||||
| WBPaper00041587 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 24 Nov 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable calcium ion binding activity. Is an ortholog of human EFHD1 (EF-hand domain family member D1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y48B6A.6a | |||||||
| Y48B6A.6b | |||||||||
| Y48B6A.6c | |||||||||
| Corresponding_CDS_history | Y48B6A.6:wp92 | ||||||||
| Y48B6A.6b:wp184 | |||||||||
| Corresponding_transcript | Y48B6A.6a.1 | ||||||||
| Y48B6A.6a.2 | |||||||||
| Y48B6A.6b.1 | |||||||||
| Y48B6A.6c.1 | |||||||||
| Other_sequence (40) | |||||||||
| Associated_feature | WBsf644832 | ||||||||
| WBsf658394 | |||||||||
| WBsf658395 | |||||||||
| WBsf990647 | |||||||||
| WBsf990648 | |||||||||
| WBsf1013792 | |||||||||
| WBsf222429 | |||||||||
| WBsf222430 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00056884 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037235 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020738 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1627 | ||||||||
| Expr7002 | |||||||||
| Expr1017855 | |||||||||
| Expr1035758 | |||||||||
| Expr1160336 | |||||||||
| Expr2011187 | |||||||||
| Expr2029423 | |||||||||
| Drives_construct | WBCnstr00002338 | ||||||||
| Microarray_results (30) | |||||||||
| Expression_cluster (218) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | II | Position | 22.5653 | |||||
| Positive | Positive_clone | Y48B6A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038072 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041587 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
