WormBase Tree Display for Gene: WBGene00010425
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WBGene00010425 | SMap | S_parent | Sequence | H37A05 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | lpin-1 | Person_evidence | WBPerson8432 | |||||
Sequence_name | H37A05.1 | ||||||||
Molecular_name | H37A05.1 | ||||||||
H37A05.1.1 | |||||||||
CE46619 | |||||||||
Other_name | CELE_H37A05.1 | Accession_evidence | NDB | BX284605 | |||||
Public_name | lpin-1 | ||||||||
DB_info | Database | AceView | gene | 5O132 | |||||
WormQTL | gene | WBGene00010425 | |||||||
WormFlux | gene | WBGene00010425 | |||||||
NDB | locus_tag | CELE_H37A05.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00010425|UniProtKB=Q9XXT5 | |||||||
family | PTHR12181 | ||||||||
NCBI | gene | 179853 | |||||||
RefSeq | protein | NM_073979.7 | |||||||
TREEFAM | TREEFAM_ID | TF314095 | |||||||
TrEMBL | UniProtAcc | Q9XXT5 | |||||||
UniProt_GCRP | UniProtAcc | Q9XXT5 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 15 Sep 2008 11:24:05 | WBPerson2970 | Name_change | CGC_name | lpin-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | lpin | ||||||||
Allele (56) | |||||||||
Strain | WBStrain00001552 | ||||||||
WBStrain00029193 | |||||||||
WBStrain00029194 | |||||||||
WBStrain00037085 | |||||||||
WBStrain00053909 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (26) | |||||||||
Ortholog (49) | |||||||||
Structured_description | Concise_description | lpin-1 encodes a putative phosphatidic acid phosphatase orthologous tobudding yeast PAH1 and human LPIN1 (OMIM:605518), LPIN2 (OMIM:605519,mutated in Majeed syndrome), and LPIN3 (OMIM:605520); lpin-1 isexpressed in vulval muscle; in mass RNAi assays, lpin-1 is requiredfor the osmotic integrity of eggs and for normal larval growth, bodythickness, locomotion, and fertility; by orthology, LPIN-1 is expectedto be dephosphorylated by SCPL-2. | Paper_evidence | WBPaper00005654 | |||||
WBPaper00006525 | |||||||||
WBPaper00024497 | |||||||||
WBPaper00025054 | |||||||||
WBPaper00029274 | |||||||||
WBPaper00029281 | |||||||||
WBPaper00029282 | |||||||||
WBPaper00029283 | |||||||||
WBPaper00029284 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson567 | |||||||||
Date_last_updated | 17 Jun 2009 00:00:00 | ||||||||
Automated_description | Predicted to enable phosphatidate phosphatase activity and transcription coactivator activity. Involved in several processes, including endomembrane system organization; macromolecule localization; and nematode larval development. Located in endoplasmic reticulum; nuclear envelope; and nucleoplasm. Expressed in head neurons and hypodermis. Used to study obesity. Human ortholog(s) of this gene implicated in morbid obesity. Is an ortholog of human LPIN2 (lipin 2). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Experimental_model | DOID:9970 | Homo sapiens | Paper_evidence | WBPaper00033438 | ||||
Curator_confirmed | WBPerson38202 | ||||||||
Date_last_updated | 11 Jun 2018 00:00:00 | ||||||||
Potential_model | DOID:11981 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13345) | |||||
Models_disease_asserted | WBDOannot00000542 | ||||||||
Molecular_info | Corresponding_CDS | H37A05.1 | |||||||
Corresponding_CDS_history | H37A05.1:wp229 | ||||||||
Corresponding_transcript | H37A05.1.1 | ||||||||
Other_sequence (51) | |||||||||
Associated_feature (20) | |||||||||
Experimental_info | RNAi_result (65) | ||||||||
Expr_pattern | Chronogram1159 | ||||||||
Expr6290 | |||||||||
Expr8650 | |||||||||
Expr8695 | |||||||||
Expr11676 | |||||||||
Expr1026973 | |||||||||
Expr1034547 | |||||||||
Expr1153265 | |||||||||
Expr2013257 | |||||||||
Expr2031488 | |||||||||
Drives_construct | WBCnstr00002394 | ||||||||
WBCnstr00013464 | |||||||||
WBCnstr00015871 | |||||||||
WBCnstr00015872 | |||||||||
Construct_product | WBCnstr00013464 | ||||||||
WBCnstr00015871 | |||||||||
WBCnstr00019172 | |||||||||
Antibody | WBAntibody00001937 | ||||||||
WBAntibody00001938 | |||||||||
WBAntibody00001939 | |||||||||
WBAntibody00001940 | |||||||||
WBAntibody00002523 | |||||||||
Microarray_results (22) | |||||||||
Expression_cluster (127) | |||||||||
Interaction (15) | |||||||||
Map_info | Map | V | Position | 5.54896 | Error | 0.007081 | |||
Positive | Positive_clone | H37A05 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (12) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |