WormBase Tree Display for Gene: WBGene00009977
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| WBGene00009977 | SMap | S_parent | Sequence | F53C11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | swan-1 | Person_evidence | WBPerson389 | |||||
| Sequence_name | F53C11.8 | ||||||||
| Molecular_name | F53C11.8 | ||||||||
| F53C11.8.1 | |||||||||
| CE10918 | |||||||||
| Other_name | CELE_F53C11.8 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | swan-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 28 Jul 2005 14:04:14 | WBPerson2970 | Name_change | CGC_name | swan-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | swan | ||||||||
| Allele (61) | |||||||||
| Strain | WBStrain00024136 | ||||||||
| WBStrain00022427 | |||||||||
| WBStrain00022428 | |||||||||
| WBStrain00022436 | |||||||||
| WBStrain00022437 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Contained_in_operon | CEOP5400 | ||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00009976 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | swan-1 encodes a protein that belongs to the family of AN11 WD repeat proteins; WD repeats are considered to form a scaffold for protein-protein interactions; SWAN-1 was initially identified as a protein that interacts with UNC-115 and the RAC proteins-CED-10, MIG-2 and RAC-2; genetic interaction studies with the Rac genes indicate that swan-1 is a negative regulator of Rac GTPase function during morphogenesis and phagocytosis of apoptotic cells; swan-1 is expressed in most cells throughout development and is predominant in the cytoplasm. | Paper_evidence | WBPaper00028497 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 01 Oct 2008 00:00:00 | ||||||||
| Automated_description | Enables LIM domain binding activity and small GTPase binding activity. Involved in several processes, including regulation of cellular component organization; response to heat; and response to osmotic stress. Located in cytoplasm. Expressed in several structures, including neuroblasts and neurons. Is an ortholog of human DCAF7 (DDB1 and CUL4 associated factor 7). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F53C11.8 | |||||||
| Corresponding_transcript | F53C11.8.1 | ||||||||
| Other_sequence (34) | |||||||||
| Associated_feature | WBsf655606 | ||||||||
| WBsf982032 | |||||||||
| WBsf1001891 | |||||||||
| WBsf1020763 | |||||||||
| WBsf234872 | |||||||||
| WBsf234873 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00048106 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00015493 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00103046 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032685 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00084262 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8273 | ||||||||
| Expr1013192 | |||||||||
| Expr1034348 | |||||||||
| Expr1151916 | |||||||||
| Expr2017148 | |||||||||
| Expr2035284 | |||||||||
| Drives_construct | WBCnstr00013229 | ||||||||
| WBCnstr00019891 | |||||||||
| WBCnstr00031770 | |||||||||
| Construct_product | WBCnstr00019891 | ||||||||
| WBCnstr00031770 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (128) | |||||||||
| Interaction (31) | |||||||||
| Map_info | Map | V | Position | 5.5935 | Error | 0.002407 | |||
| Positive | Positive_clone | F53C11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5333 | |||||||
| 4207 | |||||||||
| 4873 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
