WormBase Tree Display for Gene: WBGene00009896

WBGene00009896 SMap: S_parent: Sequence: CHROMOSOME_IV
  Identity: Version: 2
    Name: CGC_name: scl-3 Person_evidence: WBPerson261
      Sequence_name: F49E11.11
      Molecular_name: F49E11.11
        F49E11.11.1
        CE05907
      Other_name: CELE_F49E11.11 Accession_evidence: NDB BX284604
      Public_name: scl-3
    DB_info: Database: AceView gene 4N825
        WormQTL gene WBGene00009896
        WormFlux gene WBGene00009896
        NDB locus_tag CELE_F49E11.11
        Panther gene CAEEL|WormBase=WBGene00009896|UniProtKB=G5EF50
          family PTHR10334
        NCBI gene 178252
        RefSeq protein NM_070103.5
        TREEFAM TREEFAM_ID TF352352
        TrEMBL UniProtAcc G5EF50
        UniProt_GCRP UniProtAcc G5EF50
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 07 Nov 2007 11:51:23 WBPerson2970 Name_change: CGC_name: scl-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: scl
    Allele (22)
    RNASeq_FPKM (74)
    GO_annotation: 00017421
    Ortholog (58)
    Paralog (33)
    Structured_description: Concise_description: scl-3 encodes a predicted extracellular protein that is a member of the C. elegans family of SCP/TAPS domain-containing proteins. Curator_confirmed: WBPerson1843
          Date_last_updated: 26 Mar 2008 00:00:00
      Automated_description: Predicted to be located in extracellular space. Expressed in g1AL; g1AR; g1P; g2L; and g2R. Is an ortholog of human GLIPR1 (GLI pathogenesis related 1) and R3HDML (R3H domain containing like). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F49E11.11
    Corresponding_transcript: F49E11.11.1
    Other_sequence: CJC05071_1
      CJC05568_1
      CR07651
      CJC00015_3
      CJC02065_1
      CJC00015_2
      CRC01268_1
      Acan_isotig07253
      CJC07783_1
      CJC04091_1
    Associated_feature: WBsf646507
      WBsf998318
      WBsf998319
      WBsf1018478
      WBsf229374
  Experimental_info: RNAi_result: WBRNAi00015307 Inferred_automatically: RNAi_primary
      WBRNAi00032529 Inferred_automatically: RNAi_primary
      WBRNAi00047839 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr10172
      Expr1012647
      Expr1151673
      Expr2015639
      Expr2033874
    Drives_construct: WBCnstr00015503
      WBCnstr00031834
    Construct_product: WBCnstr00031834
    Microarray_results (17)
    Expression_cluster (169)
    Interaction (11)
  Map_info: Map: IV Position: 7.66415 Error: 0.012677
    Positive: Positive_clone: F49E11 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00041256
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene