WormBase Tree Display for Gene: WBGene00009661
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| WBGene00009661 | SMap | S_parent | Sequence | CHROMOSOME_II | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | patr-1 | Person_evidence | WBPerson1787 | |||||
| Sequence_name | F43G6.9 | ||||||||
| Molecular_name | F43G6.9 | ||||||||
| F43G6.9.1 | |||||||||
| CE18675 | |||||||||
| Other_name | CELE_F43G6.9 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | patr-1 | ||||||||
| DB_info | Database | AceView | gene | 2M66 | |||||
| WormQTL | gene | WBGene00009661 | |||||||
| WormFlux | gene | WBGene00009661 | |||||||
| NDB | locus_tag | CELE_F43G6.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009661|UniProtKB=Q20374 | |||||||
| family | PTHR21551 | ||||||||
| NCBI | gene | 174808 | |||||||
| RefSeq | protein | NM_064113.7 | |||||||
| SwissProt | UniProtAcc | Q20374 | |||||||
| UniProt_GCRP | UniProtAcc | Q20374 | |||||||
| OMIM | gene | 614661 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 01 Apr 2005 11:05:24 | WBPerson2970 | Name_change | CGC_name | patr-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | patr | ||||||||
| Allele (53) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Contained_in_operon | CEOP2576 | ||||||||
| Ortholog (35) | |||||||||
| Structured_description | Concise_description | patr-1 encodes the C. elegans ortholog of the Saccharomyces cerevisiae decapping activator Pat1p; patr-1 is involved in decapping-mediated mRNA decay and is required for proper recruitment of several components of P-bodies, cytoplasmic mRNA processing bodies; in C. elegans, patr-1 is an essential gene, required for embryonic and larval development, as well as wild-type brood sizes; PATR-1 localizes to P-bodies. | Paper_evidence | WBPaper00032091 | |||||
| WBPaper00032097 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 07 Jul 2010 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA binding activity. Involved in determination of adult lifespan. Located in P-body. Is an ortholog of human PATL1 (PAT1 homolog 1, processing body mRNA decay factor) and PATL2 (PAT1 homolog 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | EFO:MONDO:0014769 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:33630) | ||||
| Molecular_info | Corresponding_CDS | F43G6.9 | |||||||
| Corresponding_transcript | F43G6.9.1 | ||||||||
| Other_sequence (24) | |||||||||
| Associated_feature | WBsf650622 | ||||||||
| WBsf976357 | |||||||||
| WBsf976358 | |||||||||
| WBsf976359 | |||||||||
| WBsf976360 | |||||||||
| WBsf976361 | |||||||||
| WBsf223998 | |||||||||
| WBsf223999 | |||||||||
| WBsf224000 | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr8554 | ||||||||
| Expr1017358 | |||||||||
| Expr1034220 | |||||||||
| Expr1151074 | |||||||||
| Expr2014755 | |||||||||
| Expr2032989 | |||||||||
| Drives_construct | WBCnstr00032016 | ||||||||
| Construct_product | WBCnstr00005581 | ||||||||
| WBCnstr00005590 | |||||||||
| WBCnstr00032016 | |||||||||
| Antibody | WBAntibody00001619 | ||||||||
| WBAntibody00001622 | |||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (156) | |||||||||
| Interaction (127) | |||||||||
| Map_info | Map | II | Position | 4.04727 | |||||
| Positive | Positive_clone | F43G6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032091 | ||||||||
| WBPaper00032097 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041859 | |||||||||
| WBPaper00045542 | |||||||||
| WBPaper00050743 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059203 | |||||||||
| WBPaper00064886 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [140923 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods. | |||||||||
| Method | Gene |
