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WormBase Tree Display for Gene: WBGene00007393

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Name Class

WBGene00007393SMapS_parentSequenceC06H5
IdentityVersion2
NameCGC_namefbxa-157Person_evidenceWBPerson655
Sequence_nameC06H5.2
Molecular_nameC06H5.2
C06H5.2.1
CE40736
Other_nameCELE_C06H5.2Accession_evidenceNDBBX284605
Public_namefbxa-157
DB_infoDatabaseAceViewgene5S381
WormQTLgeneWBGene00007393
WormFluxgeneWBGene00007393
NDBlocus_tagCELE_C06H5.2
PanthergeneCAEEL|WormBase=WBGene00007393|UniProtKB=O17578
familyPTHR23015
NCBIgene182349
RefSeqproteinNM_075109.5
TREEFAMTREEFAM_IDTF322479
TrEMBLUniProtAccO17578
UniProt_GCRPUniProtAccO17578
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:48WBPerson1971EventImportedInitial conversion from CDS class of WS125
201 Mar 2007 11:55:18WBPerson2970Name_changeCGC_namefbxa-157
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classfbxa
Allele (97)
RNASeq_FPKM (74)
Ortholog (11)
Paralog (220)
Structured_descriptionConcise_descriptionThis gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.Paper_evidenceWBPaper00012854
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnriched in AWC; DD neuron; head mesodermal cell; and intestine based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including glp-1; dpy-10; and hsf-1 based on microarray and RNA-seq studies. Is affected by fifteen chemicals including Tunicamycin; levamisole; and Psoralens based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Mos1 transposase, HTH domain; FTH domain; HTH domain in Mos1 transposase; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC06H5.2
Corresponding_CDS_historyC06H5.2:wp172
Corresponding_transcriptC06H5.2.1
Associated_featureWBsf1002761
WBsf1002762
WBsf1021356
WBsf233149
Experimental_infoRNAi_resultWBRNAi00028608Inferred_automaticallyRNAi_primary
WBRNAi00039955Inferred_automaticallyRNAi_primary
WBRNAi00010353Inferred_automaticallyRNAi_primary
WBRNAi00039957Inferred_automaticallyRNAi_primary
WBRNAi00010354Inferred_automaticallyRNAi_primary
WBRNAi00039956Inferred_automaticallyRNAi_primary
Expr_patternExpr1144034
Expr2011488
Expr2029725
Drives_constructWBCnstr00033775
Construct_productWBCnstr00033775
Microarray_results (13)
Expression_cluster (180)
InteractionWBInteraction000145001
WBInteraction000308959
WBInteraction000310423
WBInteraction000329246
WBInteraction000391497
WBInteraction000412052
WBInteraction000449609
WBInteraction000546700
WBInteraction000547194
WBInteraction000547195
Map_infoMapVPosition13.3292Error0.002304
PositivePositive_cloneC06H5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00012854
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene