WormBase Tree Display for Gene: WBGene00007392

WBGene00007392 SMap: S_parent: Sequence: C06H5
  Identity: Version: 2
    Name: CGC_name: fbxa-156 Person_evidence: WBPerson655
      Sequence_name: C06H5.1
      Molecular_name: C06H5.1
        C06H5.1.1
        CE27668
      Other_name: CELE_C06H5.1 Accession_evidence: NDB BX284605
      Public_name: fbxa-156
    DB_info: Database: AceView gene 5S376
        WormQTL gene WBGene00007392
        WormFlux gene WBGene00007392
        NDB locus_tag CELE_C06H5.1
        Panther gene CAEEL|WormBase=WBGene00007392|UniProtKB=O17577
          family PTHR23015
        NCBI gene 180171
        RefSeq protein NM_171558.8
        TREEFAM TREEFAM_ID TF322479
        TrEMBL UniProtAcc O17577
        UniProt_GCRP UniProtAcc O17577
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 01 Mar 2007 11:55:18 WBPerson2970 Name_change: CGC_name: fbxa-156
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxa
    Allele (38)
    RNASeq_FPKM (74)
    Ortholog (16)
    Paralog (219)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in head mesodermal cell; intestine; and lateral ganglion based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and dpy-10 based on microarray; RNA-seq; and proteomic studies. Is affected by nineteen chemicals including 1-methylnicotinamide; D-glucopyranose; and 4-bromodiphenyl ether based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Mos1 transposase, HTH domain; FTH domain; HTH domain in Mos1 transposase; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C06H5.1
    Corresponding_CDS_history: C06H5.1:wp51
    Corresponding_transcript: C06H5.1.1
  Experimental_info: RNAi_result: WBRNAi00039955 Inferred_automatically: RNAi_primary
      WBRNAi00010353 Inferred_automatically: RNAi_primary
      WBRNAi00039957 Inferred_automatically: RNAi_primary
      WBRNAi00010354 Inferred_automatically: RNAi_primary
      WBRNAi00039956 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1025647
      Expr1144032
      Expr2011487
      Expr2029724
    Drives_construct: WBCnstr00033776
    Construct_product: WBCnstr00033776
    Microarray_results (20)
    Expression_cluster (190)
    Interaction (23)
  Map_info: Map: V Position: 13.3236 Error: 0.001973
    Positive: Positive_clone: C06H5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene