WormBase Tree Display for Gene: WBGene00004746
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| WBGene00004746 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | sdc-2 | Person_evidence | WBPerson421 | |||||
| Sequence_name | C35C5.1 | ||||||||
| Molecular_name | C35C5.1 | ||||||||
| C35C5.1.1 | |||||||||
| CE18542 | |||||||||
| Other_name | CELE_C35C5.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | sdc-2 | ||||||||
| DB_info | Database | AceView | gene | XM151 | |||||
| WormQTL | gene | WBGene00004746 | |||||||
| WormFlux | gene | WBGene00004746 | |||||||
| NDB | locus_tag | CELE_C35C5.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004746|UniProtKB=G5EBL3 | |||||||
| family | PTHR13270 | ||||||||
| NCBI | gene | 181341 | |||||||
| RefSeq | protein | NM_077523.7 | |||||||
| SwissProt | UniProtAcc | G5EBL3 | |||||||
| TREEFAM | TREEFAM_ID | TF350609 | |||||||
| UniProt_GCRP | UniProtAcc | G5EBL3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sdc | ||||||||
| Allele (134) | |||||||||
| Legacy_information | See also y15 | ||||||||
| [C.elegansII] y15 : XX animals inviable and masculinized, XO animals WT. No maternal rescue. ES3 (XX); ME3.OA>20: y46, y74, y55 (weaker, Egl or Tra phenotypes). ???Cloned: 9.2 kb transcript, encodes predicted 2962 protein (344 kD), highly charged. [Nusbaum and Meyer 1989; TY] | |||||||||
| Strain | WBStrain00035098 | ||||||||
| WBStrain00035100 | |||||||||
| WBStrain00035166 | |||||||||
| WBStrain00035105 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00009802 | ||||||||
| 00009803 | |||||||||
| 00009804 | |||||||||
| 00009805 | |||||||||
| 00009806 | |||||||||
| 00009807 | |||||||||
| 00009808 | |||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00018316 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | The sdc-2 gene encodes a protein that represses transcription of X chromosomes to achieve dosage compensation, and that also represses the male sex-determination gene her-1 to elicit hermaphrodite differentiation. | Paper_evidence | WBPaper00005215 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Involved in dosage compensation by hypoactivation of X chromosome and negative regulation of transcription by RNA polymerase II. Located in nuclear chromosome. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C35C5.1 | |||||||
| Corresponding_transcript | C35C5.1.1 | ||||||||
| Other_sequence | AF111934 | ||||||||
| Associated_feature | WBsf663360 | ||||||||
| WBsf663361 | |||||||||
| WBsf663362 | |||||||||
| WBsf663363 | |||||||||
| WBsf1007030 | |||||||||
| WBsf1007031 | |||||||||
| WBsf1023889 | |||||||||
| WBsf236384 | |||||||||
| WBsf236385 | |||||||||
| Gene_product_binds | WBsf019092 | ||||||||
| WBsf019093 | |||||||||
| Transcription_factor | WBTranscriptionFactor000093 | ||||||||
| WBTranscriptionFactor000689 | |||||||||
| Experimental_info | RNAi_result (35) | ||||||||
| Expr_pattern | Expr10429 | ||||||||
| Expr11875 | |||||||||
| Expr1028636 | |||||||||
| Expr1032344 | |||||||||
| Expr1145975 | |||||||||
| Expr2015659 | |||||||||
| Expr2033892 | |||||||||
| Drives_construct | WBCnstr00006791 | ||||||||
| WBCnstr00015322 | |||||||||
| WBCnstr00035415 | |||||||||
| Construct_product | WBCnstr00005103 | ||||||||
| WBCnstr00005104 | |||||||||
| WBCnstr00006790 | |||||||||
| WBCnstr00006791 | |||||||||
| WBCnstr00035415 | |||||||||
| Antibody | WBAntibody00000228 | ||||||||
| WBAntibody00000496 | |||||||||
| WBAntibody00000497 | |||||||||
| WBAntibody00001184 | |||||||||
| WBAntibody00002039 | |||||||||
| WBAntibody00002042 | |||||||||
| WBAntibody00002043 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (134) | |||||||||
| Interaction (77) | |||||||||
| WBProcess | WBbiopr:00000056 | ||||||||
| Map_info | Map | X | Position | 4.34757 | Error | 0.06798 | |||
| Well_ordered | |||||||||
| Positive | Inside_rearr | yDp7 | |||||||
| Positive_clone | C03B2 | ||||||||
| C35C5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Mapping_data | Multi_point | 1438 | |||||||
| 1439 | |||||||||
| 1440 | |||||||||
| 1774 | |||||||||
| 2062 | |||||||||
| 2293 | |||||||||
| 3319 | |||||||||
| 3642 | |||||||||
| 3643 | |||||||||
| 3687 | |||||||||
| Pos_neg_data (11) | |||||||||
| Landmark_gene | |||||||||
| Reference (135) | |||||||||
| Method | Gene |
