WormBase Tree Display for Gene: WBGene00004509
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| WBGene00004509 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rrf-2 | Person_evidence | WBPerson398 | |||||
| Sequence_name | M01G12.12 | ||||||||
| Molecular_name | M01G12.12 | ||||||||
| M01G12.12.1 | |||||||||
| CE23872 | |||||||||
| M01G12.12.2 | |||||||||
| Other_name | CELE_M01G12.12 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | rrf-2 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rrf | ||||||||
| Allele (214) | |||||||||
| Strain | WBStrain00007151 | ||||||||
| In_cluster | conserved_miRNA_siRNA_cluster | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (44) | |||||||||
| Paralog | WBGene00001214 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004508 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004510 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | rrf-2 encodes an RNA-directed RNA polymerase (RdRP) homolog of unknown function; RRF-2 is not obviously required for either somatic or germline RNAi, or for transitive RNAi. | Paper_evidence | WBPaper00004137 | |||||
| WBPaper00004981 | |||||||||
| WBPaper00013304 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA-dependent RNA polymerase activity. Acts upstream of or within IRE1-mediated unfolded protein response. Predicted to be part of nuclear RNA-directed RNA polymerase complex. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | M01G12.12 | |||||||
| Corresponding_transcript | M01G12.12.1 | ||||||||
| M01G12.12.2 | |||||||||
| Associated_feature | WBsf985471 | ||||||||
| WBsf985472 | |||||||||
| WBsf1010840 | |||||||||
| WBsf220407 | |||||||||
| WBsf220408 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00004657 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00050780 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034366 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1015641 | ||||||||
| Expr1032311 | |||||||||
| Expr1154473 | |||||||||
| Expr2015544 | |||||||||
| Expr2033779 | |||||||||
| Regulate_expr_cluster | WBPaper00027111:rrf-2(ok210)_downregulated | ||||||||
| WBPaper00027111:rrf-2(ok210)_upregulated | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (237) | |||||||||
| Interaction | WBInteraction000301293 | ||||||||
| WBInteraction000305949 | |||||||||
| WBInteraction000333765 | |||||||||
| WBInteraction000376484 | |||||||||
| WBInteraction000437306 | |||||||||
| WBInteraction000524314 | |||||||||
| WBProcess | WBbiopr:00000057 | ||||||||
| Map_info | Map | I | Position | 13.0561 | Error | 0.002235 | |||
| Positive | Positive_clone | M01G12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4645 | |||||||
| 5009 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004137 | ||||||||
| WBPaper00004173 | |||||||||
| WBPaper00004981 | |||||||||
| WBPaper00012007 | |||||||||
| WBPaper00023918 | |||||||||
| WBPaper00031961 | |||||||||
| WBPaper00031962 | |||||||||
| WBPaper00035324 | |||||||||
| WBPaper00038491 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
