WormBase Tree Display for Gene: WBGene00004096
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| WBGene00004096 | SMap | S_parent | Sequence | CHROMOSOME_II | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pqm-1 | |||||||
| Sequence_name | F40F8.7 | ||||||||
| Molecular_name | F40F8.7 | ||||||||
| F40F8.7.1 | |||||||||
| CE05846 | |||||||||
| Other_name | pqm-132 | Accession_evidence | EMBL | AF008590 | |||||
| CePqM132 | Accession_evidence | EMBL | AF008590 | ||||||
| CELE_F40F8.7 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | pqm-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pqm | ||||||||
| Allele (63) | |||||||||
| Strain | WBStrain00031446 | ||||||||
| WBStrain00051995 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (36) | |||||||||
| Ortholog (25) | |||||||||
| Paralog | WBGene00008640 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | pqm-1 encodes a C2H2-type zinc finger and leucine zipper-containing protein that is upregulated in response to oxidative stress induced by paraquat treatment; PQM-1 may function as a stress-responsive transcription factor. | Paper_evidence | WBPaper00003048 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable chromatin insulator sequence binding activity. Involved in several processes, including defense response to other organism; positive regulation of macromolecule biosynthetic process; and regulation of vitellogenesis. Located in cytoplasm and nucleus. Expressed in head muscle; head neurons; intestinal cell; neurons; and pseudocoelom. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F40F8.7 | |||||||
| Corresponding_transcript | F40F8.7.1 | ||||||||
| Other_sequence (31) | |||||||||
| Associated_feature | WBsf655391 | ||||||||
| WBsf717034 | |||||||||
| WBsf978483 | |||||||||
| WBsf981279 | |||||||||
| WBsf989639 | |||||||||
| WBsf989640 | |||||||||
| WBsf989641 | |||||||||
| WBsf223900 | |||||||||
| WBsf223901 | |||||||||
| WBsf223902 | |||||||||
| Gene_product_binds (3503) | |||||||||
| Transcription_factor | WBTranscriptionFactor000022 | ||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern (14) | |||||||||
| Drives_construct | WBCnstr00007738 | ||||||||
| WBCnstr00011761 | |||||||||
| WBCnstr00012696 | |||||||||
| WBCnstr00012697 | |||||||||
| WBCnstr00035700 | |||||||||
| WBCnstr00042512 | |||||||||
| Construct_product | WBCnstr00007738 | ||||||||
| WBCnstr00016269 | |||||||||
| WBCnstr00018902 | |||||||||
| WBCnstr00035700 | |||||||||
| Regulate_expr_cluster | WBPaper00060399:pqm-1(ok485)_downregulated_CoCl2_6hr | ||||||||
| WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (234) | |||||||||
| Interaction (134) | |||||||||
| Map_info | Map | II | Position | 3.32897 | Error | 0.002086 | |||
| Positive | Positive_clone | F40F8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4599 | |||||||
| Pseudo_map_position | |||||||||
| Reference (51) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
