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WormBase Tree Display for Gene: WBGene00003968

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Name Class

WBGene00003968SMapS_parentSequenceT14F9
IdentityVersion1
NameCGC_namepeb-1Person_evidenceWBPerson460
Sequence_nameT14F9.4
Molecular_nameT14F9.4a
T14F9.4a.1
CE07500
T14F9.4b
CE48479
T14F9.4c
CE53821
T14F9.4b.1
T14F9.4c.1
Other_nameCELE_T14F9.4Accession_evidenceNDBBX284606
Public_namepeb-1
DB_infoDatabaseAceViewgeneXC837
WormQTLgeneWBGene00003968
WormFluxgeneWBGene00003968
NDBlocus_tagCELE_T14F9.4
NCBIgene180532
RefSeqproteinNM_001377613.2
NM_001377612.2
NM_001029739.6
SwissProtUniProtAccA0A5S9MMK5
TREEFAMTREEFAM_IDTF316476
UniProt_GCRPUniProtAccA0A5S9MMK5
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:33WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpeb
Allele (125)
StrainWBStrain00029947
WBStrain00036952
RNASeq_FPKM (74)
GO_annotation00004083
00004084
00004085
00004086
00004087
00004088
00004089
00004090
Ortholog (24)
Structured_descriptionConcise_descriptionpeb-1 encodes a novel DNA-binding protein; during development, peb-1 activity is required for proper morphogenesis of the pharynx, vulva, and hindgut and for normal molting, feeding, and body morphology; in vitro, PEB-1 exhibits sequence-specific DNA binding to a regulatory sequence known as subelement C, which directs pharynx-specific myo-2 expression and in yeast, PEB-1 exhibits modest transcription activation activity; PEB-1 is expressed in the nuclei of all pharyngeal cells (except neurons) from the comma stage of embryogenesis through late larval stages; in addition, PEB-1 is expressed dynamically in non-pharyngeal cells, including the vulva, germline, hindgut, and hypodermis.Paper_evidenceWBPaper00004526
WBPaper00005395
WBPaper00013471
WBPaper00024643
Curator_confirmedWBPerson1843
Date_last_updated10 Sep 2007 00:00:00
Automated_descriptionEnables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II and positive regulation of transcription by RNA polymerase II. Located in nucleus. Expressed in several structures, including germ line; hypodermis; pharyngeal cell; pharyngeal-intestinal valve; and rectal epithelial cell.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS290 version of WormBase
Date_last_updated11 Sep 2023 00:00:00
Molecular_infoCorresponding_CDST14F9.4a
T14F9.4b
T14F9.4c
Corresponding_CDS_historyT14F9.4b:wp238
Corresponding_transcriptT14F9.4a.1
T14F9.4b.1
T14F9.4c.1
Other_sequence (13)
Associated_feature (25)
Gene_product_binds (63)
Transcription_factorWBTranscriptionFactor000462
Experimental_infoRNAi_result (14)
Expr_pattern (15)
Drives_constructWBCnstr00000382
WBCnstr00010458
WBCnstr00011371
WBCnstr00020648
Construct_productWBCnstr00000308
WBCnstr00000309
WBCnstr00010458
WBCnstr00016765
WBCnstr00016871
WBCnstr00020648
AntibodyWBAntibody00000344
Microarray_results (26)
Expression_cluster (226)
Interaction (57)
Map_infoMapXPosition-16.6045Error0.136176
PositivePositive_cloneT14F9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (22)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene