WormBase Tree Display for Gene: WBGene00003517
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| WBGene00003517 | Evidence | Paper_evidence | WBPaper00005726 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F31F6 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | nac-1 | |||||||
| Sequence_name | F31F6.6 | ||||||||
| Molecular_name | F31F6.6 | ||||||||
| F31F6.6.1 | |||||||||
| CE34007 | |||||||||
| Other_name | indy-1 | Accession_evidence | EMBL | AY090484 | |||||
| nad-1 | |||||||||
| cenadc1 | |||||||||
| CELE_F31F6.6 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | nac-1 | ||||||||
| DB_info | Database | AceView | gene | XP515 | |||||
| WormQTL | gene | WBGene00003517 | |||||||
| WormFlux | gene | WBGene00003517 | |||||||
| NDB | locus_tag | CELE_F31F6.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003517|UniProtKB=Q93655 | |||||||
| family | PTHR10283 | ||||||||
| NCBI | gene | 181585 | |||||||
| RefSeq | protein | NM_078072.6 | |||||||
| SwissProt | UniProtAcc | Q93655 | |||||||
| UniProt_GCRP | UniProtAcc | Q93655 | |||||||
| OMIM | gene | 608305 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nac | ||||||||
| Allele (60) | |||||||||
| Strain | WBStrain00031456 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (19) | |||||||||
| Ortholog (55) | |||||||||
| Paralog | WBGene00003519 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00007138 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003518 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | nac-1 encodes a low-affinity sodium-coupled dicarboxylate transporter homologous to INDY in D. melanogaster and to mammalian NaDC1 and NaDC3; nac-1 is expressed in the intestine, in larvae and adults. | Paper_evidence | WBPaper00005654 | |||||
| WBPaper00005726 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 10 Feb 2015 00:00:00 | ||||||||
| Automated_description | Enables low-affinity sodium:dicarboxylate symporter activity and succinate transmembrane transporter activity. Involved in succinate transport. Predicted to be located in membrane. Expressed in alimentary system. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 25. Is an ortholog of human SLC13A2 (solute carrier family 13 member 2) and SLC13A5 (solute carrier family 13 member 5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080453 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:23089) | ||||
| Molecular_info | Corresponding_CDS | F31F6.6 | |||||||
| Corresponding_CDS_history | F31F6.6:wp101 | ||||||||
| Corresponding_transcript | F31F6.6.1 | ||||||||
| Other_sequence | AY090484 | ||||||||
| Hbac_isotig07691 | |||||||||
| ACC03517_1 | |||||||||
| Dviv_isotig26777 | |||||||||
| Oden_isotig19715 | |||||||||
| JI169837.1 | |||||||||
| Associated_feature | WBsf663605 | ||||||||
| WBsf236736 | |||||||||
| WBsf236737 | |||||||||
| WBsf236738 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00031637 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00022870 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046061 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014182 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2367 | ||||||||
| Expr2368 | |||||||||
| Expr1011702 | |||||||||
| Expr1031611 | |||||||||
| Expr1149952 | |||||||||
| Expr2013852 | |||||||||
| Expr2032092 | |||||||||
| Drives_construct | WBCnstr00010791 | ||||||||
| WBCnstr00036077 | |||||||||
| Construct_product | WBCnstr00036077 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (162) | |||||||||
| Interaction (114) | |||||||||
| Map_info | Map | X | Position | 21.5469 | Error | 0.012103 | |||
| Positive | Positive_clone | F31F6 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4508 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005726 | ||||||||
| WBPaper00006504 | |||||||||
| WBPaper00025195 | |||||||||
| WBPaper00031333 | |||||||||
| WBPaper00035539 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
