WormBase Tree Display for Gene: WBGene00003062

WBGene00003062 Evidence: Paper_evidence: WBPaper00005707
  SMap: S_parent: Sequence: K09H9
  Identity: Version: 1
    Name: CGC_name: lpd-6 Person_evidence: WBPerson545
      Sequence_name: K09H9.6
      Molecular_name: K09H9.6
        K09H9.6.1
        CE37030
      Other_name: CELE_K09H9.6 Accession_evidence: NDB BX284601
      Public_name: lpd-6
    DB_info: Database: AceView gene 1D714
        WormQTL gene WBGene00003062
        WormFlux gene WBGene00003062
        NDB locus_tag CELE_K09H9.6
        Panther gene CAEEL|WormBase=WBGene00003062|UniProtKB=O44991
          family PTHR12661
        NCBI gene 171886
        RefSeq protein NM_058707.6
        TREEFAM TREEFAM_ID TF318923
        TrEMBL UniProtAcc O44991
        UniProt_GCRP UniProtAcc O44991
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:30 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lpd
    Allele (63)
    Strain: WBStrain00051139
    RNASeq_FPKM (74)
    GO_annotation: 00033745
      00033746
      00033747
      00033748
      00110535
      00110536
    Ortholog (40)
    Paralog: WBGene00050926 Caenorhabditis elegans From_analysis: modENCODE_Pseudogenes
      WBGene00044219 Caenorhabditis elegans From_analysis: modENCODE_Pseudogenes
      WBGene00023323 Caenorhabditis elegans From_analysis: modENCODE_Pseudogenes
      WBGene00013589 Caenorhabditis elegans From_analysis: modENCODE_Pseudogenes
    Structured_description: Concise_description: lpd-6 encodes a predicted rRNA-binding protein that is orthologous to Drosophila Peter Pan and the Saccharomyces cerevisiae SSF1 and SSF2 proteins that are required for ribosomal large subunit maturation; loss of lpd-6 activity via RNAi indicates that, in C. elegans, LPD-6 is required for fat storage and for larval growth and development; based upon its similarity to yeast SSF1 and SSF2, LPD-6 is predicted to be a nucleolar protein. Paper_evidence: WBPaper00005707
            WBPaper00028610
          Curator_confirmed: WBPerson1843
          Date_last_updated: 06 Nov 2006 00:00:00
      Automated_description: Predicted to enable rRNA binding activity. Involved in lipid storage. Predicted to be located in membrane. Predicted to be part of preribosome, large subunit precursor. Is an ortholog of human PPAN (peter pan homolog) and PPAN-P2RY11 (PPAN-P2RY11 readthrough). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: K09H9.6
    Corresponding_CDS_history: K09H9.6:wp126
    Corresponding_transcript: K09H9.6.1
    Other_sequence (46)
    Associated_feature: WBsf649009
      WBsf219097
  Experimental_info: RNAi_result (13)
    Expr_pattern: Expr1021591
      Expr1031440
      Expr1154178
      Expr2013253
      Expr2031484
    Drives_construct: WBCnstr00036254
    Construct_product: WBCnstr00036254
    Microarray_results (19)
    Expression_cluster (130)
    Interaction (254)
    WBProcess: WBbiopr:00000121
  Map_info: Map: I Position: -4.47544 Error: 0.000279
    Positive: Positive_clone: K09H9 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005707
    WBPaper00029292
    WBPaper00038491
    WBPaper00055090
    WBPaper00064339
    WBPaper00064663
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene