WormBase Tree Display for Gene: WBGene00003008

WBGene00003008 SMap: S_parent: Sequence: Y54G2A
  Identity: Version: 1
    Name: CGC_name: lin-22 Person_evidence: WBPerson261
      Sequence_name: Y54G2A.1
      Molecular_name: Y54G2A.1
        Y54G2A.1.1
        CE26703
      Other_name: hlh-9 Person_evidence: WBPerson346
        4D656 Accession_evidence: EMBL AF304120
        CELE_Y54G2A.1 Accession_evidence: NDB BX284604
      Public_name: lin-22
    DB_info: Database: AceView gene 4D787
        WormQTL gene WBGene00003008
        WormFlux gene WBGene00003008
        NDB locus_tag CELE_Y54G2A.1
        Panther gene CAEEL|WormBase=WBGene00003008|UniProtKB=G5EF76
          family PTHR10985
        NCBI gene 177082
        RefSeq protein NM_067880.6
        SwissProt UniProtAcc G5EF76
        UniProt_GCRP UniProtAcc G5EF76
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:30 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info (11)
  Disease_info: Potential_model: DOID:264 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:5192)
  Molecular_info: Corresponding_CDS: Y54G2A.1
    Corresponding_transcript: Y54G2A.1.1
    Other_sequence: EX916391.1
      Hbac_isotig05734
      EG025731.1
      HBC05050_1
      HBC04228_1
    Associated_feature: WBsf660013
      WBsf718055
      WBsf718056
      WBsf978797
      WBsf1026934
      WBsf1026935
      WBsf1026936
    Transcription_factor: WBTranscriptionFactor000727
  Experimental_info: RNAi_result: WBRNAi00057436 Inferred_automatically: RNAi_primary
    Expr_pattern (11)
    Drives_construct: WBCnstr00004218
      WBCnstr00036289
      WBCnstr00039720
      WBCnstr00039721
      WBCnstr00039722
      WBCnstr00039723
    Construct_product: WBCnstr00016691
      WBCnstr00016896
      WBCnstr00036289
    Regulate_expr_cluster: WBPaper00053295:lin-22(icb38)_downregulated
      WBPaper00053295:lin-22(icb38)_upregulated
      WBPaper00053295:lin-22(ot267)_downregulated
      WBPaper00053295:lin-22(ot267)_upregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053295:lin-22(ot269)_upregulated
    Microarray_results (22)
    Expression_cluster: WBPaper00032528:L3_depleted
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_embryo_enriched
      WBPaper00037950:intestine_embryo_SelectivelyEnriched
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
      WBPaper00044426:rotenone_24h_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00046509:htz-1(ok3099)_downregulated
      WBPaper00046805:csr-1(RNAi)_upregulated_Set1
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00050080:rbr-2(tm3141)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00051404:alg-1(gk214)_upregulated
      WBPaper00053295:lin-22(ot269)_downregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056284:ints-5(RNAi)_upregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056617:adr-1(gv6)_upregulated_embryo_protein
      WBPaper00056826:SGP_biased
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058886:anp-1(ok608)_upregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061527:sre-33-ZK1025.1_8337
      WBPaper00061818:ELKS-1_interacting
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062497:xpf-1(tm2842)_upregulated
      WBPaper00062554:MAGU-2_interacting
      WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
      WBPaper00065331:100nM-ivermectin_downregulated
      WBPaper00065373:Cisplatin_upregulated_WT
      WBPaper00065841:0_0
      WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
      WBPaper00065945:epidermis-rpoa-2(-)_upregulated_protein
      WBPaper00036286:Pattern_H
      WBPaper00037113:Chlorpyrifos_Diazinon_16C_regulated
      WBPaper00037113:Diazinon_16C_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00041939:control_vs_EtBr-exposed_3h
      WBPaper00041939:control_vs_UVC-exposed_3h
      WBPaper00055899:nitroguanidine_regulated
    Interaction (101)
  Map_info: Map: IV Position: -6.65585 Error: 0.044343
    Well_ordered
    Positive: Positive_clone: Y54G2A Inferred_automatically: From sequence, transcript, pseudogene data
        Y94H6
    Mapping_data: Multi_point: 683
        684
        691
  Reference (147)
  Remark: The attached sequence (Y54G2A.1) was previously connected to him-5 by mistake [030212 krb]
  Method: Gene