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WormBase Tree Display for Gene: WBGene00001889

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Name Class

WBGene00001889SMapS_parentSequenceZK131
IdentityVersion1
NameCGC_namehis-15Person_evidenceWBPerson160
Sequence_nameZK131.9
Molecular_nameZK131.9
ZK131.9.1
CE07075
Other_nameCELE_ZK131.9Accession_evidenceNDBBX284602
Public_namehis-15
DB_infoDatabaseAceViewgene2O109
WormFluxgeneWBGene00001889
NDBlocus_tagCELE_ZK131.9
NCBIgene175026
RefSeqproteinNM_064487.1
SwissProtUniProtAccP04255
UniProt_GCRPUniProtAccP04255
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:26WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhis
AlleleWBVar01498435
WBVar01498941
WBVar01499702
Legacy_information[C.elegansII] NMK. Histone type H2B. HIS3 cluster. [Roberts et al. 1989; EM]
In_clusterHIS3_cluster
RNASeq_FPKM (74)
GO_annotation00105786
00109276
00109277
00109278
00109279
Ortholog (218)
Paralog (16)
Structured_descriptionConcise_descriptionhis-15 encodes an H2B histone.Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Involved in innate immune response. Predicted to be part of nucleosome. Is an ortholog of several human genes including H2BC12 (H2B clustered histone 12); H2BC17 (H2B clustered histone 17); and H2BC3 (H2B clustered histone 3).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS290 version of WormBase
Date_last_updated11 Sep 2023 00:00:00
Molecular_infoCorresponding_CDSZK131.9
Corresponding_transcriptZK131.9.1
Other_sequenceMC00785
MCC03885_1
GO252435.1
GO251777.1
Associated_featureWBsf222394
Experimental_infoRNAi_result (17)
Expr_patternExpr1162657
Microarray_results (24)
Expression_cluster (106)
SAGE_tagSAGE:gctttggaggaaactccStrandAntisense
SAGE:aactcttttgStrandSense
Unambiguously_mapped
SAGE:aactcttttgtcaacgaStrandSense
Unambiguously_mapped
SAGE:acgtctcttctttccgtStrandAntisense
SAGE:acgtctcttcStrandAntisense
Interaction (207)
Map_infoMapIIPosition20.2996
PositivePositive_cloneZK131Inferred_automaticallyFrom sequence, transcript, pseudogene data
ZK831
Pseudo_map_position
ReferenceWBPaper00001150
WBPaper00005142
WBPaper00005182
WBPaper00038491
WBPaper00055090
WBPaper00057125
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene