WormBase Tree Display for Gene: WBGene00001864
expand all nodes | collapse all nodes | view schema
| WBGene00001864 | SMap | S_parent | Sequence | D1086 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | him-5 | Person_evidence | WBPerson261 | |||||
| Sequence_name | D1086.4 | ||||||||
| Molecular_name | D1086.4a | ||||||||
| D1086.4a.1 | |||||||||
| CE09062 | |||||||||
| D1086.4b | |||||||||
| CE45310 | |||||||||
| D1086.4b.1 | |||||||||
| Other_name | CELE_D1086.4 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | him-5 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00001864 | |||||
| WormFlux | gene | WBGene00001864 | |||||||
| NDB | locus_tag | CELE_D1086.4 | |||||||
| NCBI | gene | 183932 | |||||||
| RefSeq | protein | NM_001269627.3 | |||||||
| NM_001269626.2 | |||||||||
| TrEMBL | UniProtAcc | O17724 | |||||||
| E1B6V2 | |||||||||
| UniProt_GCRP | UniProtAcc | O17724 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 22 Aug 2008 17:09:12 | WBPerson2970 | Event | Acquires_merge | WBGene00008391 | ||||
| Name_change | Sequence_name | D1086.4 | |||||||
| Acquires_merge | WBGene00008391 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | him | ||||||||
| Reference_allele | WBVar00144023 | ||||||||
| Allele (43) | |||||||||
| Legacy_information | e1467ts : at 20x self-progeny 16% XO male 11% ova are nullo-X as a result of reductional meiotic nondisjunction; X chromosome recombination specifically reduced 50%. ES3 (progeny). ME3. NA2 (e1490 (stronger allele : 33% Him at 20x)). | ||||||||
| See also e1467, e1490 | |||||||||
| [C.elegansII] e1467ts : at 20C self-progeny 16% XO male, 3% 3X herm, 11% ova are nullo-X as a result of reductional meiotic nondisjunction; X chromosome recombination specifically reduced 50% or more, except at left end (increased); additional sterility not due to autosomal nondisjunction ( brood reduced 64% at 25C); some embryonic lethality. ES3 (progeny). ME3. OA4: e1490 (stronger allele : 33% Him at 20C)). Cloned: cosmid rescue K02A12. [Hodgkin et al. 1979; Broverman and Meneely 1994; FH] | |||||||||
| Strain (490) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00008104 | ||||||||
| 00030516 | |||||||||
| 00030517 | |||||||||
| 00030518 | |||||||||
| Ortholog | chrV_pilon.g16429 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | him-5 was identified in screens for genes that when mutated resulted in an increased frequency of X chromosome nondisjunction and thus, an increased frequency of genotypically XO males in self-fertile populations; him-5 functions in X chromosome dynamics by regulating the number and distribution of X chromosome pairing events. | Paper_evidence | WBPaper00000179 | |||||
| WBPaper00001852 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 28 Oct 2010 00:00:00 | ||||||||
| Automated_description | Involved in meiotic DNA double-strand break formation involved in reciprocal meiotic recombination and meiotic chromosome segregation. Located in condensed chromosome. Expressed in gonad. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | D1086.4a | |||||||
| D1086.4b | |||||||||
| Corresponding_transcript | D1086.4a.1 | ||||||||
| D1086.4b.1 | |||||||||
| Associated_feature | WBsf647510 | ||||||||
| WBsf232867 | |||||||||
| WBsf232868 | |||||||||
| WBsf232869 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00030368 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00111474 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012552 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061770 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043422 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111473 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9917 | ||||||||
| Expr1023729 | |||||||||
| Expr1031097 | |||||||||
| Expr1147415 | |||||||||
| Expr2012430 | |||||||||
| Expr2030666 | |||||||||
| Drives_construct | WBCnstr00036641 | ||||||||
| WBCnstr00038151 | |||||||||
| Construct_product | WBCnstr00036641 | ||||||||
| WBCnstr00038150 | |||||||||
| WBCnstr00038151 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (137) | |||||||||
| Interaction | WBInteraction000052427 | ||||||||
| WBInteraction000052836 | |||||||||
| WBInteraction000135122 | |||||||||
| WBInteraction000207924 | |||||||||
| WBInteraction000229703 | |||||||||
| WBInteraction000249693 | |||||||||
| WBInteraction000254284 | |||||||||
| WBInteraction000258008 | |||||||||
| WBInteraction000275732 | |||||||||
| WBInteraction000283949 | |||||||||
| WBInteraction000299787 | |||||||||
| WBInteraction000301535 | |||||||||
| WBInteraction000305012 | |||||||||
| WBInteraction000309747 | |||||||||
| WBInteraction000310647 | |||||||||
| WBInteraction000311098 | |||||||||
| WBInteraction000312899 | |||||||||
| WBInteraction000321565 | |||||||||
| WBInteraction000326894 | |||||||||
| WBInteraction000329127 | |||||||||
| WBInteraction000331635 | |||||||||
| WBInteraction000332936 | |||||||||
| WBInteraction000333137 | |||||||||
| WBInteraction000338896 | |||||||||
| WBInteraction000339071 | |||||||||
| WBInteraction000341520 | |||||||||
| WBInteraction000347187 | |||||||||
| WBInteraction000350425 | |||||||||
| WBInteraction000351674 | |||||||||
| WBInteraction000352846 | |||||||||
| WBInteraction000353876 | |||||||||
| WBInteraction000354752 | |||||||||
| WBInteraction000354918 | |||||||||
| WBInteraction000358072 | |||||||||
| WBInteraction000359786 | |||||||||
| WBInteraction000360653 | |||||||||
| WBInteraction000362370 | |||||||||
| WBInteraction000364172 | |||||||||
| WBInteraction000367078 | |||||||||
| WBInteraction000368413 | |||||||||
| WBInteraction000377414 | |||||||||
| WBInteraction000379579 | |||||||||
| WBInteraction000379684 | |||||||||
| WBInteraction000393671 | |||||||||
| WBInteraction000394254 | |||||||||
| WBInteraction000397550 | |||||||||
| WBInteraction000402641 | |||||||||
| WBInteraction000402855 | |||||||||
| WBInteraction000403067 | |||||||||
| WBInteraction000404918 | |||||||||
| WBInteraction000415120 | |||||||||
| WBInteraction000420301 | |||||||||
| WBInteraction000423262 | |||||||||
| WBInteraction000424185 | |||||||||
| WBInteraction000434320 | |||||||||
| WBInteraction000435248 | |||||||||
| WBInteraction000436404 | |||||||||
| WBInteraction000436549 | |||||||||
| WBInteraction000444119 | |||||||||
| WBInteraction000447651 | |||||||||
| WBInteraction000447706 | |||||||||
| WBInteraction000450497 | |||||||||
| WBInteraction000452492 | |||||||||
| WBInteraction000453100 | |||||||||
| WBInteraction000461444 | |||||||||
| WBInteraction000461670 | |||||||||
| WBInteraction000501188 | |||||||||
| WBInteraction000547131 | |||||||||
| Map_info | Map | V | Position | 6.09216 | Error | 0.018285 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | D1086 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | 2_point | 308 | |||||||
| 6177 | |||||||||
| Multi_point (33) | |||||||||
| Pos_neg_data | 1761 | ||||||||
| 4301 | |||||||||
| 6866 | |||||||||
| 7401 | |||||||||
| Landmark_gene | |||||||||
| Reference (239) | |||||||||
| Remark | This locus was previously connected to Y54G2A.1 which was a mistake [030212 krb] | ||||||||
| Method | Gene |
