WormBase Tree Display for Gene: WBGene00001565
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| WBGene00001565 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C14B9 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | gei-8 | Person_evidence | WBPerson1796 | |||||
| Sequence_name | C14B9.6 | ||||||||
| Molecular_name | C14B9.6a | ||||||||
| C14B9.6a.1 | |||||||||
| CE42991 | |||||||||
| C14B9.6c | |||||||||
| CE48463 | |||||||||
| C14B9.6c.1 | |||||||||
| Other_name | pqn-12 | ||||||||
| CELE_C14B9.6 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | gei-8 | ||||||||
| DB_info | Database | AceView | gene | 3J202 | |||||
| WormQTL | gene | WBGene00001565 | |||||||
| WormFlux | gene | WBGene00001565 | |||||||
| NDB | locus_tag | CELE_C14B9.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001565|UniProtKB=P34333 | |||||||
| family | PTHR13992 | ||||||||
| NCBI | gene | 176145 | |||||||
| RefSeq | protein | NM_171207.9 | |||||||
| NM_066372.8 | |||||||||
| SwissProt | UniProtAcc | P34333 | |||||||
| UniProt_GCRP | UniProtAcc | P34333 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gei | ||||||||
| Allele (118) | |||||||||
| Strain | WBStrain00036421 | ||||||||
| WBStrain00036659 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00041711 | ||||||||
| 00041712 | |||||||||
| 00041713 | |||||||||
| 00041714 | |||||||||
| 00041715 | |||||||||
| 00041716 | |||||||||
| 00041717 | |||||||||
| Ortholog (23) | |||||||||
| Structured_description | Concise_description | gei-8 encodes a novel protein highly similar to C. briggsae BP:CBP04038 that contains a glutamine/asparagine (Q/N)-rich ('prion') domain (by the algorithm of Michelitsch and Weissman) and two myb-like DNA-binding domains; interacts with GEX-3 in yeast two-hybrid assays. | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00005194 | |||||||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in several structures, including anal depressor muscle; egg-laying apparatus; germ line; somatic nervous system; and tail ganglion. Human ortholog(s) of this gene implicated in Huntington's disease. Is an ortholog of human NCOR1 (nuclear receptor corepressor 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:12858 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7672) | ||||
| Molecular_info | Corresponding_CDS | C14B9.6a | |||||||
| C14B9.6c | |||||||||
| Corresponding_CDS_history | C14B9.6a:wp126 | ||||||||
| C14B9.6a:wp194 | |||||||||
| C14B9.6b:wp126 | |||||||||
| C14B9.6b:wp194 | |||||||||
| C14B9.6b:wp238 | |||||||||
| C14B9.6c:wp126 | |||||||||
| C14B9.6c:wp194 | |||||||||
| C14B9.6c:wp238 | |||||||||
| Corresponding_transcript | C14B9.6a.1 | ||||||||
| C14B9.6c.1 | |||||||||
| Other_sequence | CJC01035_1 | ||||||||
| Oden_isotig08996 | |||||||||
| Associated_feature | WBsf667130 | ||||||||
| WBsf667131 | |||||||||
| WBsf667132 | |||||||||
| WBsf667133 | |||||||||
| WBsf717939 | |||||||||
| WBsf993243 | |||||||||
| WBsf993244 | |||||||||
| WBsf1015359 | |||||||||
| WBsf227081 | |||||||||
| Transcription_factor | WBTranscriptionFactor000765 | ||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr10782 | ||||||||
| Expr10783 | |||||||||
| Expr10784 | |||||||||
| Expr10785 | |||||||||
| Expr1021058 | |||||||||
| Expr1030935 | |||||||||
| Expr1144572 | |||||||||
| Expr2012017 | |||||||||
| Expr2030253 | |||||||||
| Drives_construct | WBCnstr00017732 | ||||||||
| WBCnstr00017733 | |||||||||
| WBCnstr00017734 | |||||||||
| WBCnstr00036857 | |||||||||
| Construct_product | WBCnstr00016611 | ||||||||
| WBCnstr00021812 | |||||||||
| WBCnstr00036857 | |||||||||
| Regulate_expr_cluster | WBPaper00042128:gei-8(ok1671)_downregulated | ||||||||
| WBPaper00042128:gei-8(ok1671)_upregulated | |||||||||
| Microarray_results (37) | |||||||||
| Expression_cluster (125) | |||||||||
| Interaction (34) | |||||||||
| Map_info | Map | III | Position | -0.376759 | Error | 0.000149 | |||
| Positive | Positive_clone | C14B9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | Sequence connection from [Qadota H, Kaibuchi K] | ||||||||
| The pqn-12 gene was merged into this gene following advice from [Hodgkin J]. gei-8 was previously attached to C14B9.5 but this sequence was then merged into C14B9.6 to create a splice variant and this change has led to the two gene names being merged. [020621 krb] | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
