WormBase Tree Display for Gene: WBGene00000882
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| WBGene00000882 | SMap | S_parent | Sequence | F42G9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cyn-6 | Person_evidence | WBPerson466 | |||||
| Sequence_name | F42G9.2 | ||||||||
| Molecular_name | F42G9.2 | ||||||||
| F42G9.2.1 | |||||||||
| CE01301 | |||||||||
| Other_name | cyp-6 | Person_evidence | WBPerson466 | ||||||
| CELE_F42G9.2 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | cyn-6 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 20 Sep 2004 16:20:03 | WBPerson1971 | Name_change | CGC_name | cyp-6 -> cyn-6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cyn | ||||||||
| Allele (14) | |||||||||
| Legacy_information | [C.elegansII] NMK. Cyclophilin family. Signal peptide. Cosmid C51B6. [TP] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (35) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Concise_description | cyn-6 encodes a cyclophilin most similar to human secreted cyclophilin type B isoforms that is functional when expressed in E. coli; it is expressed in the intestine. | Paper_evidence | WBPaper00002472 | |||||
| WBPaper00005482 | |||||||||
| WBPaper00026884 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 20 Mar 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable cyclosporin A binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein folding. Predicted to be located in cytoplasm and intracellular membrane-bounded organelle. Expressed in intestine. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 9. Is an ortholog of human PPIB (peptidylprolyl isomerase B). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110349 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9255) | ||||
| Molecular_info | Corresponding_CDS | F42G9.2 | |||||||
| Corresponding_transcript | F42G9.2.1 | ||||||||
| Other_sequence (76) | |||||||||
| Associated_feature | WBsf654939 | ||||||||
| WBsf658581 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00076416 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00027816 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014849 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006569 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047133 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022707 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090595 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022708 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1991 | ||||||||
| Expr1024208 | |||||||||
| Expr1030547 | |||||||||
| Expr1151001 | |||||||||
| Expr2010674 | |||||||||
| Expr2028914 | |||||||||
| Drives_construct | WBCnstr00010563 | ||||||||
| WBCnstr00037224 | |||||||||
| Construct_product | WBCnstr00010563 | ||||||||
| WBCnstr00037224 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (222) | |||||||||
| SAGE_tag (15) | |||||||||
| Interaction (142) | |||||||||
| Map_info | Map | III | Position | -26.1239 | Error | 0.022372 | |||
| Positive | Positive_clone | C51B6 | Author_evidence | Page AM | |||||
| F42G9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00002472 | ||||||||
| WBPaper00005482 | |||||||||
| WBPaper00015191 | |||||||||
| WBPaper00024704 | |||||||||
| WBPaper00026884 | |||||||||
| WBPaper00033090 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | signal_peptide | ||||||||
| [Page AM] Initially identified by the sequencing project. Referred to as cypB homolog by Blast analysis. cDNA clone isolated | |||||||||
| PPIase or cyclophilin, EC 5.2.1.8 | |||||||||
| This gene has been renamed with approval of the CGC (cyp-6->cyn-6) | Person_evidence | WBPerson466 | |||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
