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WormBase Tree Display for Analysis: RNASeq_Study.SRP016006

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Name Class

RNASeq_Study.SRP016006DB_infoDatabaseSRAStudySRP016006
TitleComparison of Male and Female (Thomas 2012)
GroupProjectRNASeq.remanei
Subproject (30)
DescriptionThis project defines the transcriptomes of XO (male) and XX (female or mutant pseudo-female) Caenorhabditis nematodes. The data allow the overall composition and sexual regulation of the transcriptome within a single species to be determined. In addition, the five related species studied allow meta-comparisons between them. Because two of the five (C. elegans and C. briggsae) produce a self-fertile XX hermaphrodite, while the XX sex in the remaining three (C. japonica, C. remanei, and C. brenneri) are true females, the data are particularly useful for inferring effects of sexual mode on genome-wide gene expression. Overall Design: L4 larvae and adults were pooled for each sex for five species (C. elegans, C. briggsae, C. japonica, C. brenneri, and C. remanei). Each of these 10 species-sex combinations was replicated three times, for a total of 30 samples.
GSE41367: Caenorhabditis sex-specific RNAseq
Independent_variableSex
Species_in_analysisCaenorhabditis elegans
Caenorhabditis briggsae
Caenorhabditis brenneri
Caenorhabditis remanei
Caenorhabditis japonica
ReferenceWBPaper00041689