WormBase Tree Display for CDS: C53A5.3
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C53A5.3 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C53A5 | |||
Structure | Source_exons (4) | |||||
DB_info | Database | KEGG | KEGG_id | 3.5.1.98 | ||
SwissProt | UniProtAcc | O17695 | ||||
UniProt | UniProtAcc | O17695 | ||||
AlphaFold | entry | O17695 | ||||
UniProt_GCRP | UniProtAcc | O17695 | ||||
NCBI_protein | GI_number | GI:3875199 | ||||
TREEFAM | TREEFAM_ID | TF106171 | ||||
Protein_id | CHROMOSOME_V | CAB03984 | 1 | |||
DB_remark | HDA-1 protein; contains similarity to Pfam domain PF00850 (Histone deacetylase domain); contains similarity to Interpro domains IPR050284 (Histone deacetylase and polyamine deacetylase), IPR023696 (Ureohydrolase domain superfamily), IPR000286 (Histone deacetylase family), IPR003084 (Histone deacetylase), IPR023801 (Histone deacetylase domain), IPR037138 (Histone deacetylase domain superfamily) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00001834 | ||||
Corresponding_transcript | C53A5.3.1 | |||||
Corresponding_protein | CE08952 | |||||
Corresponding_PCR_product | cenix:10-a2 | |||||
mv_C53A5.3 | ||||||
sjj_C53A5.3 | ||||||
Corresponding_oligo_set (14) | ||||||
Matching_cDNA | male_Nanopore_Roach_104401 | Inferred_automatically | transcript_builder.pl | |||
male_Nanopore_Roach_125281 | Inferred_automatically | transcript_builder.pl | ||||
young_adult_Nanopore_Roach_1644 | ||||||
young_adult_Nanopore_Roach_42878 | Inferred_automatically | transcript_builder.pl | ||||
young_adult_Nanopore_Roach_82706 | Inferred_automatically | transcript_builder.pl | ||||
young_adult_Nanopore_Roach_104256 | Inferred_automatically | transcript_builder.pl | ||||
male_Nanopore_Roach_42032 | Inferred_automatically | transcript_builder.pl | ||||
L2_Nanopore_Roach_37699 | Inferred_automatically | transcript_builder.pl | ||||
L2_Nanopore_Roach_81886 | Inferred_automatically | transcript_builder.pl | ||||
L2_Nanopore_Roach_65503 | Inferred_automatically | transcript_builder.pl | ||||
L1_Nanopore_Roach_82482 | Inferred_automatically | transcript_builder.pl | ||||
L4_Nanopore_Roach_936 | ||||||
adult_Nanopore_Roach_66765 | Inferred_automatically | transcript_builder.pl | ||||
L4_Nanopore_Roach_53608 | Inferred_automatically | transcript_builder.pl | ||||
L3_Nanopore_Roach_77513 | Inferred_automatically | transcript_builder.pl | ||||
adult_Nanopore_Roach_23923 | ||||||
L1_Nanopore_Roach_36854 | Inferred_automatically | transcript_builder.pl | ||||
adult_Nanopore_Roach_2145 | ||||||
L3_Nanopore_Roach_35892 | Inferred_automatically | transcript_builder.pl | ||||
adult_Nanopore_Roach_36405 | Inferred_automatically | transcript_builder.pl | ||||
L3_Nanopore_Roach_1589 | ||||||
male_Nanopore_Roach_1199 | ||||||
L4_Nanopore_Roach_24000 | Inferred_automatically | transcript_builder.pl | ||||
adult_Nanopore_Roach_85693 | Inferred_automatically | transcript_builder.pl | ||||
yk433g11.5 | Inferred_automatically | transcript_builder.pl | ||||
yk1577e05.5 | Inferred_automatically | transcript_builder.pl | ||||
yk61e5.5 | Inferred_automatically | transcript_builder.pl | ||||
yk1461f02.3 | Inferred_automatically | transcript_builder.pl | ||||
yk237b7.5 | Inferred_automatically | transcript_builder.pl | ||||
yk340h4.5 | Inferred_automatically | transcript_builder.pl | ||||
YA_Nanopore_Li_241129 | Inferred_automatically | transcript_builder.pl | ||||
yk473a5.5 | Inferred_automatically | transcript_builder.pl | ||||
yk1381f11.5 | Inferred_automatically | transcript_builder.pl | ||||
yk766d03.5 | Inferred_automatically | transcript_builder.pl | ||||
EM_Nanopore_Li_248984 | Inferred_automatically | transcript_builder.pl | ||||
EC012222 | Inferred_automatically | transcript_builder.pl | ||||
yk1577e05.3 | Inferred_automatically | transcript_builder.pl | ||||
FN906250 | Inferred_automatically | transcript_builder.pl | ||||
CK575857 | Inferred_automatically | transcript_builder.pl | ||||
L1_Nanopore_Li_91459 | Inferred_automatically | transcript_builder.pl | ||||
EC003152 | Inferred_automatically | transcript_builder.pl | ||||
OSTF003G9_1 | Inferred_automatically | transcript_builder.pl | ||||
yk109d9.5 | Inferred_automatically | transcript_builder.pl | ||||
yk313a7.5 | Inferred_automatically | transcript_builder.pl | ||||
yk463a11.5 | Inferred_automatically | transcript_builder.pl | ||||
EC024131 | Inferred_automatically | transcript_builder.pl | ||||
EC026752 | Inferred_automatically | transcript_builder.pl | ||||
EM_Nanopore_Li_8476 | Inferred_automatically | transcript_builder.pl | ||||
OSTR003G9_1 | Inferred_automatically | transcript_builder.pl | ||||
yk1381f11.3 | Inferred_automatically | transcript_builder.pl | ||||
L1_Nanopore_Li_126890 | Inferred_automatically | transcript_builder.pl | ||||
FN872416 | Inferred_automatically | transcript_builder.pl | ||||
elegans_PE_SS_GG4999|c0_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
yk763g02.5 | Inferred_automatically | transcript_builder.pl | ||||
yk1646d03.5 | Inferred_automatically | transcript_builder.pl | ||||
YA_Nanopore_Li_155383 | Inferred_automatically | transcript_builder.pl | ||||
yk211f11.5 | Inferred_automatically | transcript_builder.pl | ||||
yk1646d03.3 | Inferred_automatically | transcript_builder.pl | ||||
yk613e7.5 | Inferred_automatically | transcript_builder.pl | ||||
YA_Nanopore_Li_7817 | Inferred_automatically | transcript_builder.pl | ||||
yk1628c02.3 | Inferred_automatically | transcript_builder.pl | ||||
yk1628c02.5 | Inferred_automatically | transcript_builder.pl | ||||
yk636h3.5 | Inferred_automatically | transcript_builder.pl | ||||
yk245a8.5 | Inferred_automatically | transcript_builder.pl | ||||
L1_Nanopore_Li_217673 | Inferred_automatically | transcript_builder.pl | ||||
RNAi_result (74) | ||||||
Microarray_results (15) | ||||||
Brief_identification | Histone deacetylase 1 | Accession_evidence | UniProt | SP:O17695 | ||
RNASeq_FPKM (74) | ||||||
Associated_feature | WBsf008469 | |||||
Method | curated |