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WormBase Tree Display for CDS: C53A5.3

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Name Class

C53A5.3EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceC53A5
StructureSource_exons1174
221338
3841250
13441570
DB_infoDatabaseKEGGKEGG_id3.5.1.98
SwissProtUniProtAccO17695
UniProtUniProtAccO17695
AlphaFoldentryO17695
UniProt_GCRPUniProtAccO17695
NCBI_proteinGI_numberGI:3875199
TREEFAMTREEFAM_IDTF106171
Protein_idCHROMOSOME_VCAB039841
DB_remarkHDA-1 protein; contains similarity to Pfam domain PF00850 (Histone deacetylase domain); contains similarity to Interpro domains IPR050284 (Histone deacetylase and polyamine deacetylase), IPR023696 (Ureohydrolase domain superfamily), IPR000286 (Histone deacetylase family), IPR003084 (Histone deacetylase), IPR023801 (Histone deacetylase domain), IPR037138 (Histone deacetylase domain superfamily)
OriginFrom_laboratoryHX
SpeciesCaenorhabditis elegans
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00001834
Corresponding_transcriptC53A5.3.1
Corresponding_proteinCE08952
Corresponding_PCR_productcenix:10-a2
mv_C53A5.3
sjj_C53A5.3
Corresponding_oligo_set (14)
Matching_cDNA (65)
RNAi_resultWBRNAi00100755
WBRNAi00071596
WBRNAi00008550
WBRNAi00082188
WBRNAi00092463
WBRNAi00117598
WBRNAi00113276
WBRNAi00082122
WBRNAi00099179
WBRNAi00082190
WBRNAi00099583
WBRNAi00082119
WBRNAi00110811
WBRNAi00086816
WBRNAi00115435
WBRNAi00100007
WBRNAi00115432
WBRNAi00092462
WBRNAi00082189
WBRNAi00064090
WBRNAi00115687
WBRNAi00091475
WBRNAi00065912
WBRNAi00094010
WBRNAi00067212
WBRNAi00110647
WBRNAi00101708
WBRNAi00099381
WBRNAi00099785
WBRNAi00024317
WBRNAi00069934
WBRNAi00081706
WBRNAi00115429
WBRNAi00067290
WBRNAi00069991
WBRNAi00081709
WBRNAi00110645
WBRNAi00100568
WBRNAi00063054
WBRNAi00106573
WBRNAi00111918
WBRNAi00063028
WBRNAi00100942
WBRNAi00082187
WBRNAi00083940
WBRNAi00024889
WBRNAi00090671
WBRNAi00091917
WBRNAi00067088
WBRNAi00067107
WBRNAi00114897
WBRNAi00062797
WBRNAi00110646
WBRNAi00117488
WBRNAi00110648
WBRNAi00081705
WBRNAi00092457
WBRNAi00043061
WBRNAi00115688
WBRNAi00067135
WBRNAi00089600
WBRNAi00089630
WBRNAi00100381
WBRNAi00078291
WBRNAi00067121
WBRNAi00114901
WBRNAi00067004
WBRNAi00113047
WBRNAi00082117
WBRNAi00030096
WBRNAi00081710
WBRNAi00081580
WBRNAi00063055
WBRNAi00100194
Microarray_results (15)
Brief_identificationHistone deacetylase 1Accession_evidenceUniProtSP:O17695
RNASeq_FPKM (74)
Associated_featureWBsf008469
Methodcurated