WormBase Tree Display for CDS: C53A5.3
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| C53A5.3 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C53A5 | |||
| Structure | Source_exons | 1 | 174 | |||
| 221 | 338 | |||||
| 384 | 1250 | |||||
| 1344 | 1570 | |||||
| DB_info | Database | KEGG | KEGG_id | 3.5.1.98 | ||
| SwissProt | UniProtAcc | O17695 | ||||
| UniProt | UniProtAcc | O17695 | ||||
| AlphaFold | entry | O17695 | ||||
| UniProt_GCRP | UniProtAcc | O17695 | ||||
| NCBI_protein | GI_number | GI:3875199 | ||||
| TREEFAM | TREEFAM_ID | TF106171 | ||||
| Protein_id | CHROMOSOME_V | CAB03984 | 1 | |||
| DB_remark | HDA-1 protein; contains similarity to Pfam domain PF00850 (Histone deacetylase domain); contains similarity to Interpro domains IPR050284 (Histone deacetylase and polyamine deacetylase), IPR023696 (Ureohydrolase domain superfamily), IPR000286 (Histone deacetylase family), IPR003084 (Histone deacetylase), IPR023801 (Histone deacetylase domain), IPR037138 (Histone deacetylase domain superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00001834 | ||||
| Corresponding_transcript | C53A5.3.1 | |||||
| Corresponding_protein | CE08952 | |||||
| Corresponding_PCR_product | cenix:10-a2 | |||||
| mv_C53A5.3 | ||||||
| sjj_C53A5.3 | ||||||
| Corresponding_oligo_set | 192776_at | |||||
| A_12_P102985 | ||||||
| Aff_C53A5.3 | ||||||
| GPL13394_WBGene00001834 | ||||||
| GPL13914_C53A5.3 | ||||||
| GPL14144_C53A5.3_562-621_0.901_30_C | ||||||
| GPL14144_C53A5.3_742-801_0.909_26_B | ||||||
| GPL14144_C53A5.3_988-1047_0.941_8_A | ||||||
| GPL3518_CE08952 | ||||||
| GPL8304_CE_WBGene00001834_A | ||||||
| GPL8304_CE_WBGene00001834_B | ||||||
| GPL8673_C53A5_3P00014 | ||||||
| GPL8673_C53A5_3P00334 | ||||||
| GPL8673_C53A5_3P01190 | ||||||
| Matching_cDNA | male_Nanopore_Roach_104401 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_125281 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_1644 | ||||||
| young_adult_Nanopore_Roach_42878 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_82706 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_104256 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_42032 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_37699 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_81886 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_65503 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_82482 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_936 | ||||||
| adult_Nanopore_Roach_66765 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_53608 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_77513 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_23923 | ||||||
| L1_Nanopore_Roach_36854 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_2145 | ||||||
| L3_Nanopore_Roach_35892 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_36405 | Inferred_automatically | transcript_builder.pl | ||||
| L3_Nanopore_Roach_1589 | ||||||
| male_Nanopore_Roach_1199 | ||||||
| L4_Nanopore_Roach_24000 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_85693 | Inferred_automatically | transcript_builder.pl | ||||
| yk433g11.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk1577e05.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk61e5.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk1461f02.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk237b7.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk340h4.5 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_241129 | Inferred_automatically | transcript_builder.pl | ||||
| yk473a5.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk1381f11.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk766d03.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_248984 | Inferred_automatically | transcript_builder.pl | ||||
| EC012222 | Inferred_automatically | transcript_builder.pl | ||||
| yk1577e05.3 | Inferred_automatically | transcript_builder.pl | ||||
| FN906250 | Inferred_automatically | transcript_builder.pl | ||||
| CK575857 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_91459 | Inferred_automatically | transcript_builder.pl | ||||
| EC003152 | Inferred_automatically | transcript_builder.pl | ||||
| OSTF003G9_1 | Inferred_automatically | transcript_builder.pl | ||||
| yk109d9.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk313a7.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk463a11.5 | Inferred_automatically | transcript_builder.pl | ||||
| EC024131 | Inferred_automatically | transcript_builder.pl | ||||
| EC026752 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_8476 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR003G9_1 | Inferred_automatically | transcript_builder.pl | ||||
| yk1381f11.3 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_126890 | Inferred_automatically | transcript_builder.pl | ||||
| FN872416 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG4999|c0_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| yk763g02.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk1646d03.5 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_155383 | Inferred_automatically | transcript_builder.pl | ||||
| yk211f11.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk1646d03.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk613e7.5 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_7817 | Inferred_automatically | transcript_builder.pl | ||||
| yk1628c02.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk1628c02.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk636h3.5 | Inferred_automatically | transcript_builder.pl | ||||
| yk245a8.5 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_217673 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result (74) | ||||||
| Microarray_results (15) | ||||||
| Brief_identification | Histone deacetylase 1 | Accession_evidence | UniProt | SP:O17695 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf008469 | |||||
| Method | curated |
