WormBase Schema for Model: Method
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| ?Method | Remark | ?Text | #Evidence | |||||
|---|---|---|---|---|---|---|---|---|
| Display | No_display | |||||||
| Colour | #Colour | |||||||
| CDS_colour | #Colour | |||||||
| Frame_sensitive | ||||||||
| Strand_sensitive | Show_up_strand | #Colour | ||||||
| Score | Score_by_offset | |||||||
| Score_by_width | ||||||||
| Score_by_histogram | UNIQUE | Float | ||||||
| Score_bounds | UNIQUE | Float | UNIQUE | Float | ||||
| Percent | ||||||||
| Overlap_mode | UNIQUE | Overlap | ||||||
| Bumpable | ||||||||
| Cluster | ||||||||
| Width | UNIQUE | Float | ||||||
| Symbol | UNIQUE | Text | ||||||
| Right_priority | UNIQUE | Float | ||||||
| Max_mag | UNIQUE | Float | ||||||
| Min_mag | UNIQUE | Float | ||||||
| Show_text | ||||||||
| Join_blocks | ||||||||
| Display_gaps | ||||||||
| Gapped | ||||||||
| Align_mapping | Allow_misalign | |||||||
| Allow_clipping | ||||||||
| Map_gaps | ||||||||
| Blastn | ||||||||
| Blixem | Blixem_X | |||||||
| Blixem_N | ||||||||
| Blixem_P | ||||||||
| Belvu | ||||||||
| EMBL_dump | EMBL_feature | UNIQUE | Text | |||||
| EMBL_threshold | UNIQUE | Float | ||||||
| EMBL_qualifier | Text | UNIQUE | Text | |||||
| Gene_assemble | Gene_assemble_method | ?Method | UNIQUE | Float | ||||
| Intron_min | UNIQUE | Int | ||||||
| Exon_min | UNIQUE | Int | ||||||
| Intron_cost | UNIQUE | Float | UNIQUE | Float | UNIQUE | Int | ||
| Inter_gene_cost | UNIQUE | Float | ||||||
| GF_parameters | GF_range | UNIQUE | Int | |||||
| GF_ATG_cutoff | UNIQUE | Float | ||||||
| GF_5_cutoff | UNIQUE | Float | ||||||
| GF_3_cutoff | UNIQUE | Float | ||||||
| GFF | GFF_source | UNIQUE | Text | |||||
| GFF_feature | UNIQUE | Text | ||||||
| GFF_SO | UNIQUE | ?SO_term | UNIQUE | ?Ace2SO | ||||
| EMBL_dump_info | #EMBL_dump_info |
