WormBase Tree Display for Gene: WBGene00015061
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WBGene00015061 | SMap | S_parent | Sequence | B0228 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 4 | |||||||
Name | CGC_name | cpna-2 | Person_evidence | WBPerson56 | |||||
Sequence_name | B0228.4 | ||||||||
Molecular_name (12) | |||||||||
Other_name | tag-308 | ||||||||
CELE_B0228.4 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | cpna-2 | ||||||||
DB_info | Database | AceView | gene | 2I41 | |||||
WormQTL | gene | WBGene00015061 | |||||||
WormFlux | gene | WBGene00015061 | |||||||
NDB | locus_tag | CELE_B0228.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00015061|UniProtKB=Q09221 | |||||||
family | PTHR45751 | ||||||||
NCBI | gene | 174250 | |||||||
RefSeq | protein | NM_001026713.4 | |||||||
NM_063224.6 | |||||||||
NM_063222.4 | |||||||||
NM_001047258.3 | |||||||||
SwissProt | UniProtAcc | Q09221 | |||||||
TREEFAM | TREEFAM_ID | TF351315 | |||||||
UniProt_GCRP | UniProtAcc | Q09221 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 22 Apr 2005 11:55:18 | WBPerson2970 | Name_change | CGC_name | tag-308 | ||||
3 | 21 Apr 2009 16:04:55 | WBPerson9133 | Name_change | CGC_name | cpna-2 | ||||
Other_name | tag-308 | ||||||||
4 | 10 Jun 2014 12:12:12 | WBPerson1983 | Event | Acquires_merge | WBGene00043075 | ||||
Acquires_merge | WBGene00015060 | ||||||||
WBGene00043075 | |||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cpna | ||||||||
Allele (381) | |||||||||
Strain | WBStrain00036140 | ||||||||
WBStrain00037963 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00050283 | ||||||||
00050284 | |||||||||
00050285 | |||||||||
Ortholog (25) | |||||||||
Paralog | WBGene00001577 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
WBGene00006441 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00006495 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00007044 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00007221 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00012128 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | cpna-2 encodes proteins with similarity to several InterPro domains including those of polycystin cation channels, von Willebrand factor, the DNA recombination repair protein BRCA2, protein-tyrosine phosphatase, non-receptor type-13, glyoxylate carboligase, and copines, Ca2+-dependent phosphatidylserine binding proteins; cpna-2::gfp reporter fusions are expressed in body wall muscle. | Paper_evidence | WBPaper00026677 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 14 Dec 2009 00:00:00 | ||||||||
Automated_description | Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in nucleus. Expressed in body wall musculature; muscle cell; and pharyngeal muscle cell. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info (5) | |||||||||
Experimental_info | RNAi_result | WBRNAi00038764 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00009607 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00038763 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00038762 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00009606 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00009605 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00001063 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Chronogram1418 | ||||||||
Expr89 | |||||||||
Expr3676 | |||||||||
Expr5023 | |||||||||
Expr5024 | |||||||||
Expr1024361 | |||||||||
Expr1036435 | |||||||||
Expr1142973 | |||||||||
Expr2010498 | |||||||||
Expr2028738 | |||||||||
Drives_construct (3) | |||||||||
Microarray_results (50) | |||||||||
Expression_cluster (209) | |||||||||
Interaction | WBInteraction000371459 | ||||||||
WBInteraction000386094 | |||||||||
WBInteraction000396907 | |||||||||
WBInteraction000565486 | |||||||||
WBInteraction000576746 | |||||||||
WBInteraction000578440 | |||||||||
WBInteraction000583916 | |||||||||
WBInteraction000584201 | |||||||||
Map_info | Map | II | Position | 0.55876 | Error | 0.003674 | |||
Positive | Positive_clone | B0228 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 5147 | |||||||
4221 | |||||||||
4530 | |||||||||
5562 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00026677 | ||||||||
WBPaper00039197 | |||||||||
WBPaper00041771 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00060839 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
[140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag. | |||||||||
Method | Gene |