WormBase Tree Display for Gene: WBGene00008040
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WBGene00008040 | SMap | S_parent | Sequence | C40H1 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | ttr-5 | |||||||
Sequence_name | C40H1.5 | ||||||||
Molecular_name | C40H1.5 | ||||||||
C40H1.5.1 | |||||||||
CE00113 | |||||||||
Other_name | CELE_C40H1.5 | Accession_evidence | NDB | BX284603 | |||||
Public_name | ttr-5 | ||||||||
DB_info | Database | AceView | gene | 3K419 | |||||
WormQTL | gene | WBGene00008040 | |||||||
WormFlux | gene | WBGene00008040 | |||||||
NDB | locus_tag | CELE_C40H1.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00008040|UniProtKB=Q03575 | |||||||
family | PTHR21700 | ||||||||
NCBI | gene | 176312 | |||||||
RefSeq | protein | NM_066653.4 | |||||||
SwissProt | UniProtAcc | Q03575 | |||||||
TREEFAM | TREEFAM_ID | TF315773 | |||||||
UniProt_GCRP | UniProtAcc | Q03575 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 20 Sep 2007 11:48:01 | WBPerson2970 | Name_change | CGC_name | ttr-5 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | ttr | ||||||||
Allele | WBVar01500260 | ||||||||
WBVar01499774 | |||||||||
WBVar00849884 | |||||||||
WBVar00849885 | |||||||||
WBVar00849886 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00049748 | ||||||||
00049749 | |||||||||
00049750 | |||||||||
00049751 | |||||||||
00110767 | |||||||||
Ortholog (38) | |||||||||
Paralog (62) | |||||||||
Structured_description | Concise_description | C40H1.5 encodes a protein containing a predicted signal sequence followed by a transthyretin-like domain; the product of C40H1.5 belongs to a family of apparently nematode-specific proteins whose function is not yet known. | Paper_evidence | WBPaper00002969 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 04 Sep 2007 00:00:00 | ||||||||
Automated_description | Predicted to be located in cell surface and extracellular region. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C40H1.5 | |||||||
Corresponding_transcript | C40H1.5.1 | ||||||||
Other_sequence (118) | |||||||||
Associated_feature | WBsf225550 | ||||||||
Experimental_info | RNAi_result | WBRNAi00029711 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00011820 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00006140 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00078581 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00042261 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00078622 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (5) | |||||||||
Drives_construct | WBCnstr00033283 | ||||||||
Construct_product | WBCnstr00033283 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (221) | |||||||||
Interaction (177) | |||||||||
Map_info | Map | III | Position | 0.412782 | Error | 0.003006 | |||
Positive | Positive_clone | C40H1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00002969 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |