WormBase Tree Display for Gene: WBGene00003735
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WBGene00003735 | SMap | S_parent | Sequence | Y18D10A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | nhx-8 | |||||||
Sequence_name | Y18D10A.6 | ||||||||
Molecular_name | Y18D10A.6a | ||||||||
Y18D10A.6a.1 | |||||||||
CE31092 | |||||||||
Y18D10A.6b | |||||||||
CE31093 | |||||||||
Y18D10A.6b.1 | |||||||||
Other_name | CELE_Y18D10A.6 | Accession_evidence | NDB | BX284601 | |||||
Public_name | nhx-8 | ||||||||
DB_info | Database | AceView | gene | 1N425 | |||||
WormQTL | gene | WBGene00003735 | |||||||
WormFlux | gene | WBGene00003735 | |||||||
NDB | locus_tag | CELE_Y18D10A.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003735|UniProtKB=G5EBN7 | |||||||
family | PTHR10110 | ||||||||
NCBI | gene | 189474 | |||||||
RefSeq | protein | NM_001026557.4 | |||||||
NM_001026558.5 | |||||||||
TREEFAM | TREEFAM_ID | TF354313 | |||||||
TrEMBL | UniProtAcc | G5EBN7 | |||||||
G5EFN1 | |||||||||
UniProt_GCRP | UniProtAcc | G5EBN7 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nhx | ||||||||
Allele (184) | |||||||||
Strain | WBStrain00002334 | ||||||||
WBStrain00002723 | |||||||||
WBStrain00031483 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (17) | |||||||||
Ortholog (34) | |||||||||
Paralog (8) | |||||||||
Structured_description | Concise_description | nhx-8 encodes two isoforms of a sodium/proton exchanger expressed intracellularly within hypodermal seam cells, pharyngeal muscles, pharyngeal-intestinal and intestinal-rectal valve cells, and vulval cells; nhx-8 has no obvious phenotype in mass RNAi screens; NHX-8 is thought to prevent intracellular acidification by catalysing the electroneutral exchange of vesicular sodium for an intracellular proton. | Paper_evidence | WBPaper00004402 | |||||
WBPaper00005421 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable potassium:proton antiporter activity and sodium:proton antiporter activity. Predicted to be involved in potassium ion transmembrane transport and regulation of intracellular pH. Predicted to be located in Golgi membrane. Expressed in several structures, including hypodermis; pharyngeal muscle cell; pharyngeal-intestinal valve; rectal valve cell; and vulva. Is an ortholog of human SLC9A8 (solute carrier family 9 member A8). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed (2) | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS (2) | ||||||||
Corresponding_CDS_history | Y18D10A.6:wp80 | ||||||||
Corresponding_transcript | Y18D10A.6a.1 | ||||||||
Y18D10A.6b.1 | |||||||||
Other_sequence (44) | |||||||||
Associated_feature | WBsf643780 | ||||||||
WBsf656987 | |||||||||
WBsf218643 | |||||||||
Experimental_info | RNAi_result | WBRNAi00116504 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00055620 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00004546 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (13) | |||||||||
Drives_construct | WBCnstr00003003 | ||||||||
WBCnstr00003255 | |||||||||
WBCnstr00004498 | |||||||||
WBCnstr00010716 | |||||||||
WBCnstr00010727 | |||||||||
Construct_product | WBCnstr00010727 | ||||||||
Microarray_results (23) | |||||||||
Expression_cluster (109) | |||||||||
Interaction (32) | |||||||||
Map_info | Map | I | Position | 14.1387 | Error | 0.010006 | |||
Positive | Positive_clone | Y18D10A | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4534 | |||||||
5086 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00055090 | |||||||||
WBPaper00066025 | |||||||||
Remark | Sequence connection from [Nehrke K, Melvin J] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
nxh-2 nxh-3 nxh-4 nxh-5 nxh-6 nxh-7 nxh-8 nxh-9 published in cgc5421 actually refer to nhx genes | CGC_data_submission | ||||||||
Method | Gene |