WormBase Tree Display for Gene: WBGene00001795
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WBGene00001795 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C05C12 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | gtl-1 | Person_evidence | WBPerson51 | |||||
Sequence_name | C05C12.3 | ||||||||
Molecular_name (3) | |||||||||
Other_name | tag-33 | CGC_data_submission | |||||||
CELE_C05C12.3 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | gtl-1 | ||||||||
DB_info | Database | AceView | gene | 4M14 | |||||
WormQTL | gene | WBGene00001795 | |||||||
WormFlux | gene | WBGene00001795 | |||||||
NDB | locus_tag | CELE_C05C12.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001795|UniProtKB=G5ECM4 | |||||||
family | PTHR13800 | ||||||||
NCBI | gene | 178031 | |||||||
RefSeq | protein | NM_069710.6 | |||||||
TrEMBL | UniProtAcc | G5ECM4 | |||||||
UniProt_GCRP | UniProtAcc | G5ECM4 | |||||||
OMIM | gene | 603576 | |||||||
605692 | |||||||||
608961 | |||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | gtl | ||||||||
Allele (118) | |||||||||
Strain (2) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00011355 | ||||||||
00011356 | |||||||||
00011357 | |||||||||
00011358 | |||||||||
00011359 | |||||||||
00011360 | |||||||||
00011361 | |||||||||
00011362 | |||||||||
Ortholog (46) | |||||||||
Paralog | WBGene00001651 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00001796 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00000425 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00004149 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00008731 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00020972 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00021404 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00021408 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | gtl-1 encodes a TRPM subfamily member of the TRP channel family that affects the periodicity of the defecation cycle in combination with gon-2; expression includes the intestine. | Paper_evidence (2) | ||||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable monoatomic cation channel activity. Involved in defecation. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis-parkinsonism/dementia complex 1; cataract; and congenital stationary night blindness 1C. Is an ortholog of human TRPM1 (transient receptor potential cation channel subfamily M member 1); TRPM3 (transient receptor potential cation channel subfamily M member 3); and TRPM7 (transient receptor potential cation channel subfamily M member 7). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0110867 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7146) | ||||
DOID:0050534 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7146) | ||||||
DOID:0111246 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17994) | ||||||
DOID:83 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17992) | ||||||
Molecular_info | Corresponding_CDS | C05C12.3 | |||||||
Corresponding_CDS_history | C05C12.3:wp99 | ||||||||
Corresponding_transcript | C05C12.3.1 | ||||||||
Other_sequence | FK807706.1 | ||||||||
MHC01321_1 | |||||||||
MH01590 | |||||||||
Dviv_isotig25122 | |||||||||
FM207828.1 | |||||||||
Associated_feature | WBsf668304 | ||||||||
WBsf1018190 | |||||||||
WBsf230849 | |||||||||
Experimental_info | RNAi_result | WBRNAi00010181 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00039701 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00001394 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00001519 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (10) | |||||||||
Drives_construct | WBCnstr00003737 | ||||||||
WBCnstr00007204 | |||||||||
WBCnstr00007207 | |||||||||
WBCnstr00007208 | |||||||||
WBCnstr00007209 | |||||||||
WBCnstr00011622 | |||||||||
WBCnstr00013197 | |||||||||
WBCnstr00021190 | |||||||||
WBCnstr00036678 | |||||||||
Construct_product | WBCnstr00011622 | ||||||||
WBCnstr00013197 | |||||||||
WBCnstr00036678 | |||||||||
Microarray_results (18) | |||||||||
Expression_cluster (178) | |||||||||
Interaction (18) | |||||||||
Map_info | Map | IV | Position | 4.92955 | Error | 0.001473 | |||
Positive | Positive_clone | C05C12 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4386 | |||||||
4526 | |||||||||
Pseudo_map_position | |||||||||
Reference (30) | |||||||||
Remark | Sequence connection from Kwan CSM, Ragnauth CD and Baylis HA [021008 ck1] | ||||||||
Gene name created from parsing 'genotype' field from CGC strain information | CGC_data_submission | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |