WormBase Tree Display for Gene: WBGene00001795
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WBGene00001795 | Evidence | CGC_data_submission | |||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C05C12 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | gtl | ||||||
Allele (118) | |||||||
Strain (2) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00011355 | ||||||
00011356 | |||||||
00011357 | |||||||
00011358 | |||||||
00011359 | |||||||
00011360 | |||||||
00011361 | |||||||
00011362 | |||||||
Ortholog (46) | |||||||
Paralog | WBGene00001651 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00001796 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00000425 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00004149 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00008731 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00020972 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00021404 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00021408 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | gtl-1 encodes a TRPM subfamily member of the TRP channel family that affects the periodicity of the defecation cycle in combination with gon-2; expression includes the intestine. | Paper_evidence | WBPaper00005092 | |||
WBPaper00011328 | |||||||
Curator_confirmed | WBPerson48 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to enable monoatomic cation channel activity. Involved in defecation. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis-parkinsonism/dementia complex 1; cataract; and congenital stationary night blindness 1C. Is an ortholog of human TRPM1 (transient receptor potential cation channel subfamily M member 1); TRPM3 (transient receptor potential cation channel subfamily M member 3); and TRPM7 (transient receptor potential cation channel subfamily M member 7). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0110867 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7146) | ||
DOID:0050534 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7146) | ||||
DOID:0111246 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17994) | ||||
DOID:83 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17992) | ||||
Molecular_info | Corresponding_CDS | C05C12.3 | |||||
Corresponding_CDS_history | C05C12.3:wp99 | ||||||
Corresponding_transcript | C05C12.3.1 | ||||||
Other_sequence | FK807706.1 | ||||||
MHC01321_1 | |||||||
MH01590 | |||||||
Dviv_isotig25122 | |||||||
FM207828.1 | |||||||
Associated_feature | WBsf668304 | ||||||
WBsf1018190 | |||||||
WBsf230849 | |||||||
Experimental_info | RNAi_result | WBRNAi00010181 | Inferred_automatically | RNAi_primary | |||
WBRNAi00039701 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00001394 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00001519 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern (10) | |||||||
Drives_construct | WBCnstr00003737 | ||||||
WBCnstr00007204 | |||||||
WBCnstr00007207 | |||||||
WBCnstr00007208 | |||||||
WBCnstr00007209 | |||||||
WBCnstr00011622 | |||||||
WBCnstr00013197 | |||||||
WBCnstr00021190 | |||||||
WBCnstr00036678 | |||||||
Construct_product | WBCnstr00011622 | ||||||
WBCnstr00013197 | |||||||
WBCnstr00036678 | |||||||
Microarray_results (18) | |||||||
Expression_cluster (178) | |||||||
Interaction (18) | |||||||
Map_info | Map | IV | Position | 4.92955 | Error | 0.001473 | |
Positive | Positive_clone | C05C12 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 4386 | |||||
4526 | |||||||
Pseudo_map_position | |||||||
Reference (30) | |||||||
Remark | Sequence connection from Kwan CSM, Ragnauth CD and Baylis HA [021008 ck1] | ||||||
Gene name created from parsing 'genotype' field from CGC strain information | CGC_data_submission | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |