WormBase Tree Display for Gene: WBGene00001252
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WBGene00001252 | Evidence | Paper_evidence | WBPaper00018113 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C39B10 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | elt-4 | Person_evidence | WBPerson71 | |||||
Sequence_name | C39B10.6 | ||||||||
Molecular_name (6) | |||||||||
Other_name | CELE_C39B10.6 | Accession_evidence | NDB | BX284606 | |||||
Public_name | elt-4 | ||||||||
DB_info | Database | AceView | gene | XL93 | |||||
WormQTL | gene | WBGene00001252 | |||||||
WormFlux | gene | WBGene00001252 | |||||||
NDB | locus_tag | CELE_C39B10.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00001252|UniProtKB=Q8MQA7 | |||||||
family | PTHR10071 | ||||||||
NCBI | gene | 181249 | |||||||
RefSeq | protein | NM_001381084.1 | |||||||
NM_001270176.2 | |||||||||
SwissProt | UniProtAcc | Q8MQA7 | |||||||
UniProt_GCRP | UniProtAcc | Q8MQA7 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | elt | ||||||||
Allele (13) | |||||||||
Strain | WBStrain00022678 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (14) | |||||||||
Ortholog | WBGene00222794 | Brugia malayi | From_analysis | WormBase-Compara | |||||
CSP21.g13177 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
chrX_pilon.g19908 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00239537 | Onchocerca volvulus | From_analysis | WormBase-Compara | ||||||
WBGene00255925 | Strongyloides ratti | From_analysis | WormBase-Compara | ||||||
FB:FBgn0003507 | Drosophila melanogaster | From_analysis | EnsEMBL-Compara | ||||||
OrthoInspector | |||||||||
FB:FBgn0038391 | Drosophila melanogaster | From_analysis | EnsEMBL-Compara | ||||||
OrthoFinder | |||||||||
HGNC:15802 | Homo sapiens | From_analysis | EnsEMBL-Compara | ||||||
PhylomeDB | |||||||||
Paralog | WBGene00001186 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00001249 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00001250 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00001251 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00015981 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00001310 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00001311 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00001253 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | elt-4 encodes an unusually small (74-residue) GATA factor, that is expressed in embryonic gut and that may have a minor role in gut development. | Paper_evidence | WBPaper00005295 | |||||
WBPaper00018113 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enables double-stranded DNA binding activity. Involved in determination of adult lifespan and positive regulation of transcription by RNA polymerase II. Located in nucleus. Expressed in intestine; marginal cell; pm6; and pm7. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); congenital heart disease (multiple); and familial atrial fibrillation. Is an ortholog of human GATA5 (GATA binding protein 5). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0050650 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:15802) | ||||
DOID:9408 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:15802) | ||||||
DOID:10763 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:15802) | ||||||
DOID:1657 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:15802) | ||||||
DOID:6419 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:15802) | ||||||
DOID:0080332 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:15802) | ||||||
DOID:12930 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:15802) | ||||||
DOID:0060224 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:15802) | ||||||
Molecular_info | Corresponding_CDS | C39B10.6a | |||||||
C39B10.6b | |||||||||
Corresponding_CDS_history | C39B10.6b:wp259 | ||||||||
Corresponding_transcript | C39B10.6a.1 | ||||||||
C39B10.6b.1 | |||||||||
Other_sequence | XIC01077_1 | ||||||||
MAC01468_1 | |||||||||
MA02133 | |||||||||
Associated_feature | WBsf648471 | ||||||||
WBsf655154 | |||||||||
WBsf978301 | |||||||||
WBsf236280 | |||||||||
WBsf236281 | |||||||||
WBsf236282 | |||||||||
Transcription_factor | WBTranscriptionFactor000316 | ||||||||
Experimental_info | RNAi_result | WBRNAi00102037 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00069741 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00042182 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr2705 | ||||||||
Expr1018495 | |||||||||
Expr1146178 | |||||||||
Expr1200009 | |||||||||
Expr2011295 | |||||||||
Expr2029531 | |||||||||
Drives_construct | WBCnstr00010914 | ||||||||
WBCnstr00037008 | |||||||||
Construct_product (3) | |||||||||
Microarray_results (16) | |||||||||
Expression_cluster (73) | |||||||||
Interaction (38) | |||||||||
Map_info | Map | X | Position | 2.20928 | Error | 0.005424 | |||
Positive | Positive_clone | C39B10 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4284 | |||||||
Pseudo_map_position | |||||||||
Reference (17) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |