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WormBase Tree Display for Gene: WBGene00038862

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Name Class

WBGene00038862SMapS_parentSequencecb25.fpc4132b
IdentityVersion2
NameCGC_nameCbr-rps-13From_analysisInferred_from_orthology
Sequence_nameCBG19687
Molecular_nameCBG19687
CBG19687.1
CBP04584
Other_nameCBG_19687Accession_evidenceNDBHE600934
Public_nameCbr-rps-13
DB_infoDatabaseNDBlocus_tagCBG_19687
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-rps-13
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrps
RNASeq_FPKMWBls:00000022702.13From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
3042.04From_analysisRNASeq.briggsae.WBls:0000002.control_mean
3079.88From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
3344.12From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
2680.84From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
2891From_analysisRNASeq.briggsae.WBls:0000002.control_median
2951.74From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:0000003523.925From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
526.551From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
529.177From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
455.267From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
502.79From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:0000004911.523From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
929.156From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
946.788From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
1020.78From_analysisRNASeq.briggsae.WBls:0000004.control_mean
1348.92From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
909.113From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
987.561From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:00000271553.66From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2018.89From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
2409.8From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3656.84From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2522.92From_analysisRNASeq.briggsae.WBls:0000027.control_median
2564.08From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3026.94From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000353456.88From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003812139.8From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
1870.5From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
3793.38From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
3859.26From_analysisRNASeq.briggsae.WBls:0000038.control_median
3925.15From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
5432.21From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:00000412069.37From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2104.21From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
2201.04From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2203.85From_analysisRNASeq.briggsae.WBls:0000041.control_median
2303.5From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
2327.1From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
1863.43From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
2151.47From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2172.72From_analysisRNASeq.briggsae.WBls:0000041.control_median
2241.22From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000631737.47From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
1770.02From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
1860.96From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
2083.42From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2389.52From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
2659.11From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2125.24From_analysisRNASeq.briggsae.WBls:0000063.control_median
2174.77From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2631.56From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001012327.1From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2819.06From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
2272.36From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2576.25From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00137078
00137079
00137080
Ortholog (30)
Structured_descriptionAutomated_descriptionPredicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Is an ortholog of C. elegans rps-13.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS292 version of WormBase
Date_last_updated24 Apr 2024 00:00:00
Molecular_infoCorresponding_CDSCBG19687
Corresponding_CDS_historyCBG19687:bp194
Corresponding_transcriptCBG19687.1
Other_sequenceOden_isotig11788
FE918915.1
SSC00190_1
RSC03141_1
MH00960
RS07217
CSC01014_1
HS00297
FG581788.1
Tcol_isotig06975
PT00832
FE918704.1
GW408537.1
ES741476.1
EX013708.1
AW313027.1
JO472697.1
FE919441.1
ASC17420_1
CD203311.1
MJC00305_1
Tcir_isotig08951
FE919330.1
EX911987.1
FE918605.1
NB09513
SR00978
EY458775.1
JI465480.1
AE03870
EX012467.1
DA05796
EX010760.1
GW409818.1
CK850286.1
EY472870.1
CD374177.1
PTC00045_1
FE916241.1
HC03177
MHC03087_1
TV00263
NAC02340_1
SRC07389_1
XI00545
BF023712.1
RS10651
AS14244
AM743508.1
EX011465.1
NB07173
DA01838
NBC07518_1
WBC00443_1
EX912615.1
XIC00149_1
EX913147.1
EX010115.1
Tcir_isotig24016
AE01127
ES412346.1
CBC00652_1
FE914192.1
EX011321.1
TCC00508_1
NB07346
DN558094.1
NBC08576_1
HG04160
FC810590.1
MA03238
FE918557.1
CJC00372_1
FE916601.1
ES410863.1
Tcir_isotig05751
ACC39416_1
CR02799
BMC11649_1
HBC00128_1
ES414183.1
Hbac_isotig00711
AS15434
EX013118.1
XI01136
EX914119.1
ES742934.1
BMC11648_1
TVC00990_1
PSC00491
Oden_isotig23077
FG587165.1
FE919174.1
GR11435
Tcol_isotig06973
ES742993.1
HGC10283_1
HCC00476_1
EY468689.1
ES742823.1
JI210852.1
TLC00264_1
MP02224
HBC11961_1
TS00801
Acan_isotig13678
FC816018.1
AW562291.1
FG619508.1
GW407274.1
ES880208.1
HC02051
FD514287.1
DAC02683_1
CK726302.1
LSC00922_1
ES741261.1
BUC01874_1
Tcol_isotig06976
MI01287
EX555917.1
CD455005.1
Name_isotig03915
EX014793.1
CD455663.1
HGC08299_1
AYC00273_1
Hbac_isotig00712
EX915276.1
CB043733.1
ASC00628_2
AS11024
RSC00060_1
BMC11650_1
AS02956
AS03724
PPC00742_1
HSC01629_1
PT00747
HG11747
SC00172
AS01515
ACC13100_1
EX009321.1
JI173268.1
GW406778.1
ES741800.1
PT00342
TX00273
Name_isotig03689
X16591.1
EY459359.1
CV200726.1
MI02210
MJ00665
ES413410.1
MC01064
EX916766.1
AE00957
EX014512.1
PTC03161_1
AS04786
NBC00819_1
ES412349.1
EX015209.1
TDC00071_1
FE920191.1
ES412447.1
DI02488
CK855426.1
BF824705.1
EX916216.1
PVC01437_1
AA701724.1
EX910567.1
GR977596.1
DIC01787_1
CBC11622_1
TS01532
FE919887.1
HGC10531_1
EX914295.1
EX013249.1
EX915342.1
CD455348.1
Oden_isotig11787
Dviv_isotig26561
DA05025
CR11035
CBC12889_1
HBC15590_1
MAC02607_1
HG03717
EX009213.1
EX006950.1
Tcol_isotig06974
ASC00628_1
CK850558.1
DN557935.1
EX566394.1
GRC02668_1
EX013035.1
Name_isotig08181
WBC00443_2
EX557916.1
SS01481
GW411960.1
DA00256
ES412974.1
HG03456
XIC02678_1
GR977313.1
CK850593.1
OOC03228_1
DN558003.1
ES410346.1
FC821845.1
RS10180
HGC00750_1
EX910932.1
EX912387.1
BF824697.1
CD455551.1
DN558115.1
EX912244.1
CD455280.1
CRC00352_1
CR12512
GR978087.1
WBC01485_1
TSC01700_1
CBC02757_1
EX008879.1
GR979170.1
HG09962
Acan_isotig15506
EX911262.1
AI130292.1
OVC00492_1
DAC00171_1
SSC04229_1
NB07533
ES412697.1
BXC07220_1
ACC01214_1
EX014493.1
ES412206.1
EX012059.1
EX011805.1
BF918297.1
WBC00169_1
FC820968.1
AS01166
CJC11926_1
BU088736.1
RSC00379_1
CR07064
MCC05192_1
DA01839
PP00475
TSC00289_1
HG11024
Experimental_infoExpr_patternExpr1068004
Microarray_resultsGPL8303_CB6_WBGene00038862_A
GPL8303_CB6_WBGene00038862_B
GPL14143_CBG19687_66-125_0.918_3_B
GPL14143_CBG19687_295-354_0.936_1_A
GPL14143_CBG19687_381-440_0.805_10_C
MethodGene