WormBase Tree Display for Gene: WBGene00004825
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WBGene00004825 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | R12H7 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | skr-19 | Person_evidence | WBPerson322 | |||||
Sequence_name | R12H7.3 | ||||||||
Molecular_name (3) | |||||||||
Other_name | CELE_R12H7.3 | Accession_evidence | NDB | BX284606 | |||||
Public_name | skr-19 | ||||||||
DB_info | Database | AceView | gene | XN842 | |||||
WormQTL | gene | WBGene00004825 | |||||||
WormFlux | gene | WBGene00004825 | |||||||
NDB | locus_tag | CELE_R12H7.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004825|UniProtKB=G5EC92 | |||||||
family | PTHR11165 | ||||||||
NCBI | gene | 181446 | |||||||
RefSeq | protein | NM_077792.8 | |||||||
TREEFAM | TREEFAM_ID | TF300142 | |||||||
TrEMBL | UniProtAcc | G5EC92 | |||||||
UniProt_GCRP | UniProtAcc | G5EC92 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | skr | ||||||||
Allele | WBVar01500067 | ||||||||
WBVar01499887 | |||||||||
WBVar01499519 | |||||||||
WBVar01499888 | |||||||||
WBVar01499710 | |||||||||
WBVar00068989 | |||||||||
WBVar01200023 | |||||||||
WBVar00521377 | |||||||||
WBVar01498960 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00010669 | ||||||||
00010670 | |||||||||
00010671 | |||||||||
00010672 | |||||||||
00010673 | |||||||||
00108003 | |||||||||
Contained_in_operon | CEOPX116 | ||||||||
Ortholog (23) | |||||||||
Paralog (20) | |||||||||
Structured_description | Concise_description | The skr-19 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-19(RNAi) animals are at least superficially normal. | Paper_evidence | WBPaper00005128 | |||||
WBPaper00005129 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable cullin family protein binding activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | R12H7.3 | |||||||
Corresponding_CDS_history | R12H7.3:wp223 | ||||||||
Corresponding_transcript | R12H7.3.1 | ||||||||
Other_sequence | AF440518 | ||||||||
CBC02057_1 | |||||||||
Associated_feature (5) | |||||||||
Experimental_info | RNAi_result (11) | ||||||||
Expr_pattern | Expr1025571 | ||||||||
Expr1032400 | |||||||||
Expr1155524 | |||||||||
Expr2015846 | |||||||||
Expr2034079 | |||||||||
Microarray_results (20) | |||||||||
Expression_cluster (186) | |||||||||
Interaction | WBInteraction000216243 | ||||||||
WBInteraction000227307 | |||||||||
WBInteraction000242982 | |||||||||
WBInteraction000262705 | |||||||||
WBInteraction000344749 | |||||||||
WBInteraction000370008 | |||||||||
WBInteraction000384784 | |||||||||
WBInteraction000431711 | |||||||||
WBInteraction000458671 | |||||||||
Map_info | Map | X | Position | 10.4048 | |||||
Positive | Positive_clone | R12H7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00029151 | ||||||||
WBPaper00029221 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |