Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00038862

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00038862SMapS_parentSequencecb25.fpc4132b
IdentityVersion2
NameCGC_nameCbr-rps-13From_analysisInferred_from_orthology
Sequence_nameCBG19687
Molecular_nameCBG19687
CBG19687.1
CBP04584
Other_nameCBG_19687Accession_evidenceNDBHE600934
Public_nameCbr-rps-13
DB_infoDatabaseNDBlocus_tagCBG_19687
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-rps-13
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrps
RNASeq_FPKMWBls:00000022702.13From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
3042.04From_analysisRNASeq.briggsae.WBls:0000002.control_mean
3079.88From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
3344.12From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
2680.84From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
2891From_analysisRNASeq.briggsae.WBls:0000002.control_median
2951.74From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:0000003523.925From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
526.551From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
529.177From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
455.267From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
502.79From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:0000004911.523From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
929.156From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
946.788From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
1020.78From_analysisRNASeq.briggsae.WBls:0000004.control_mean
1348.92From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
909.113From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
987.561From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:00000271553.66From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2018.89From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
2409.8From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3656.84From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2522.92From_analysisRNASeq.briggsae.WBls:0000027.control_median
2564.08From_analysisRNASeq.briggsae.WBls:0000027.control_mean
3026.94From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000353456.88From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003812139.8From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
1870.5From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
3793.38From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
3859.26From_analysisRNASeq.briggsae.WBls:0000038.control_median
3925.15From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
5432.21From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:00000412069.37From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2104.21From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
2201.04From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2203.85From_analysisRNASeq.briggsae.WBls:0000041.control_median
2303.5From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
2327.1From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
1863.43From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
2151.47From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2172.72From_analysisRNASeq.briggsae.WBls:0000041.control_median
2241.22From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000631737.47From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
1770.02From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
1860.96From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
2083.42From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2389.52From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
2659.11From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2125.24From_analysisRNASeq.briggsae.WBls:0000063.control_median
2174.77From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2631.56From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001012327.1From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2819.06From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
2272.36From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2576.25From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00137078
00137079
00137080
OrthologWBGene00004482Caenorhabditis elegansFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00055464Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00146185Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00114251Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00122097Caenorhabditis japonicaFrom_analysisOMA
Inparanoid_8
WormBase-Compara
CSP21.g11670Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g21400Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g114Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP31.g13406Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP38.g13304Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP40.g21844Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_05388.g19559Caenorhabditis angariaFrom_analysisWormBase-Compara
Csp5_scaffold_00408.g10935Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_16434Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_010730Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04581Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g11698Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30170700Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00233980Brugia malayiFrom_analysisWormBase-Compara
CSP29.g22735Caenorhabditis beceiFrom_analysisWormBase-Compara
CBOVI.g4279Caenorhabditis bovisFrom_analysisWormBase-Compara
chrV_pilon.g17309Caenorhabditis elegansFrom_analysisWormBase-Compara
Cni-rps-13Caenorhabditis nigoniFrom_analysisWormBase-Compara
CSP32.g15816Caenorhabditis sulstoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g16124Caenorhabditis tropicalisFrom_analysisWormBase-Compara
CSP39.g2038Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
WBGene00244804Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00260337Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00301163Trichuris murisFrom_analysisWormBase-Compara
WBGene00302916Trichuris murisFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Is an ortholog of C. elegans rps-13.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS292 version of WormBase
Date_last_updated24 Apr 2024 00:00:00
Molecular_infoCorresponding_CDSCBG19687
Corresponding_CDS_historyCBG19687:bp194
Corresponding_transcriptCBG19687.1
Other_sequence (262)
Experimental_infoExpr_patternExpr1068004
Microarray_resultsGPL8303_CB6_WBGene00038862_A
GPL8303_CB6_WBGene00038862_B
GPL14143_CBG19687_66-125_0.918_3_B
GPL14143_CBG19687_295-354_0.936_1_A
GPL14143_CBG19687_381-440_0.805_10_C
MethodGene